Os01g0174600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Zinc finger, CCCH-type domain containing protein.
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Os01g0174600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Zinc finger, CCCH-type domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 214.45 | 0.688 | 2.91 | 0.138 | 0.272 | 0.672 | 0.408 | 0.815 | 0.143 | 13.6 | 25.84 | 10 | -- | -- |
| 215.29 | 0.683 | 2.9 | 0.272 | 0.26 | 0.614 | 0.116 | -- | 0.17 | 13.7 | 25.93 | 9 | -- | -- |
| 214.94 | 0.683 | 2.91 | 0.196 | 0.261 | 0.659 | -- | 0.573 | 0.142 | 13.5 | 25.51 | 9 | -- | -- |
| 215.34 | 0.683 | 2.9 | 0.276 | 0.258 | 0.613 | -- | -- | 0.171 | 13.7 | 25.89 | 9 | -- | -- |
| 217.54 | 0.687 | 2.92 | 0.19 | -- | 0.689 | -- | 0.547 | 0.0889 | -- | 21.9 | 9 | -- | -- |
| 220.91 | 0.697 | 2.93 | 0.128 | 0.111 | -- | 0.0937 | -- | 0.0385 | 13.5 | -- | -- | -- | -- |
| 220.94 | 0.696 | 2.93 | 0.131 | 0.111 | -- | -- | -- | 0.0391 | 13.6 | -- | -- | -- | -- |
| 217.9 | 0.688 | 2.92 | 0.23 | -- | 0.588 | -- | -- | 0.0949 | -- | 21.9 | 9 | -- | -- |
| 217.17 | 0.686 | 2.91 | -- | 0.228 | 0.513 | -- | -- | 0.119 | 13.6 | 25.76 | 8 | -- | -- |
| 221.7 | 0.696 | 2.93 | 0.127 | -- | -- | -- | -- | 0.0367 | -- | -- | -- | -- | -- |
| 221.4 | 0.696 | 2.93 | -- | 0.109 | -- | -- | -- | 0.0244 | 13.5 | -- | -- | -- | -- |
| 219.2 | 0.69 | 2.92 | -- | -- | 0.492 | -- | -- | 0.063 | -- | 22.01 | 9 | -- | -- |
| 222.12 | 0.696 | 2.93 | -- | -- | -- | -- | -- | 0.0226 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 197.45 | humidity | 80.0 | 30 | < th | dose independent | rect. | 1 | 1 |
| 4 | 197.45 | humidity | 80.0 | 30 | < th | dose dependent | rect. | 1 | 1 |
| 43 | 200.56 | temperature | 20.0 | 90 | < th | dose dependent | rect. | 24 | 1 |
| 51 | 205.01 | temperature | 20.0 | 90 | < th | dose independent | rect. | 24 | 1 |
| 53 | 205.16 | temperature | 30.0 | 10 | > th | dose independent | rect. | 10 | 1 |
| 65 | 206.05 | temperature | 20.0 | 10 | < th | dose dependent | rect. | 24 | 2 |
| 77 | 206.82 | humidity | 80.0 | 10 | < th | dose independent | rect. | 21 | 6 |
| 81 | 206.84 | humidity | 80.0 | 10 | < th | dose dependent | rect. | 21 | 6 |
| 86 | 206.98 | humidity | 80.0 | 90 | < th | dose dependent | rect. | 21 | 5 |
| 89 | 207.24 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 12 | 3 |
| 99 | 207.47 | atmosphere | 995.0 | 14400 | < th | dose dependent | rect. | 14 | 1 |
| 122 | 207.61 | atmosphere | 995.0 | 14400 | < th | dose independent | rect. | 14 | 1 |
| 140 | 207.89 | wind | 5.0 | 90 | > th | dose independent | rect. | 12 | 1 |
| 144 | 207.97 | wind | 5.0 | 90 | > th | dose dependent | rect. | 12 | 1 |
| 164 | 208.18 | wind | 5.0 | 1440 | < th | dose independent | rect. | 8 | 1 |
| 166 | 208.26 | wind | 5.0 | 1440 | > th | dose dependent | rect. | 8 | 1 |
| 183 | 208.45 | wind | 5.0 | 1440 | > th | dose independent | rect. | 8 | 1 |
| 186 | 208.49 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 15 | 1 |
| 191 | 208.60 | humidity | 80.0 | 90 | < th | dose dependent | rect. | 24 | 7 |
| 197 | 208.67 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 10 | 2 |
| 258 | 209.09 | wind | 5.0 | 10 | > th | dose independent | rect. | 12 | 2 |
| 285 | 209.28 | wind | 5.0 | 720 | > th | dose independent | rect. | 11 | 1 |
| 352 | 209.53 | wind | 5.0 | 720 | > th | dose independent | rect. | 10 | 3 |
| 369 | 209.72 | wind | 5.0 | 1440 | > th | dose independent | rect. | 7 | 6 |
| 372 | 209.75 | wind | 5.0 | 1440 | > th | dose independent | rect. | 8 | 4 |
| 403 | 209.90 | wind | 5.0 | 1440 | < th | dose independent | rect. | 7 | 6 |
| 446 | 210.23 | temperature | 20.0 | 270 | < th | dose dependent | rect. | 21 | 5 |
| 447 | 210.23 | temperature | 20.0 | 270 | < th | dose dependent | rect. | 9 | 17 |
| 470 | 210.37 | humidity | 80.0 | 10 | < th | dose independent | rect. | 21 | 17 |
| 488 | 210.40 | temperature | 20.0 | 270 | < th | dose dependent | rect. | 18 | 8 |
| 501 | 210.48 | temperature | 20.0 | 270 | < th | dose dependent | rect. | 14 | 12 |
| 506 | 210.50 | wind | 5.0 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 533 | 210.70 | wind | 3.0 | 90 | > th | dose dependent | rect. | 11 | 3 |
| 536 | 210.72 | temperature | 30.0 | 10 | < th | dose independent | sin | 8 | NA |
| 544 | 210.79 | temperature | 30.0 | 10 | > th | dose dependent | rect. | 10 | 1 |
| 559 | 210.88 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 9 | 12 |
| 565 | 210.93 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 566 | 210.93 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 17 | 1 |
| 613 | 211.11 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 9 | 10 |
| 626 | 211.15 | wind | 3.0 | 720 | > th | dose dependent | rect. | 11 | 1 |
| 627 | 211.15 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 638 | 211.29 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 20 | 1 |
| 666 | 211.37 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 677 | 211.41 | humidity | 80.0 | 10 | < th | dose independent | rect. | 1 | 13 |
| 703 | 211.56 | wind | 3.0 | 720 | > th | dose dependent | rect. | 10 | 3 |
| 715 | 211.60 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 13 | 11 |
| 747 | 211.71 | temperature | 20.0 | 720 | > th | dose independent | rect. | 13 | 10 |
| 751 | 211.74 | radiation | 20.0 | 1440 | > th | dose independent | rect. | 6 | 1 |
| 807 | 211.88 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 808 | 211.88 | atmosphere | 995.0 | 14400 | < th | dose independent | rect. | 18 | 1 |
| 813 | 211.88 | atmosphere | 995.0 | 14400 | < th | dose dependent | rect. | 18 | 1 |
| 816 | 211.88 | wind | 3.0 | 1440 | > th | dose dependent | rect. | 7 | 6 |
| 823 | 211.91 | temperature | 20.0 | 270 | < th | dose dependent | sin | 17 | NA |
| 860 | 212.02 | humidity | 90.0 | 1440 | > th | dose independent | rect. | 1 | 1 |
| 864 | 212.03 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 24 | 1 |
| 871 | 212.05 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 6 | 21 |
| 894 | 212.12 | wind | 5.0 | 90 | > th | dose independent | rect. | 17 | 21 |
| 917 | 212.18 | temperature | 20.0 | 30 | > th | dose dependent | rect. | 13 | 20 |
| 932 | 212.22 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 20 | 1 |
| 935 | 212.23 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 1 | 1 |
| 949 | 212.27 | wind | 5.0 | 1440 | > th | dose independent | sin | 4 | NA |
| 952 | 212.28 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 3 | 4 |
| 959 | 212.31 | wind | 5.0 | 1440 | < th | dose independent | sin | 4 | NA |
| 968 | 212.33 | temperature | 20.0 | 720 | < th | dose dependent | rect. | 18 | 3 |
| 983 | 212.37 | wind | 3.0 | 1440 | > th | dose dependent | rect. | 3 | 11 |
| 986 | 212.39 | temperature | 15.0 | 10 | > th | dose independent | rect. | 13 | 23 |