Os01g0173900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to MRP-like ABC transporter.
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Os01g0173900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to MRP-like ABC transporter.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 65.9 | 0.381 | 13 | 1.55 | 0.511 | -1.39 | -0.588 | 2.59 | 0.175 | 1.37 | 21.4 | 663 | -- | -- |
| 70.23 | 0.39 | 13.1 | 1.04 | 0.487 | -1.2 | -0.394 | -- | 0.0636 | 1.83 | 20.34 | 666 | -- | -- |
| 67.21 | 0.382 | 13 | 1.56 | 0.523 | -1.38 | -- | 2.56 | 0.166 | 1.58 | 21.52 | 669 | -- | -- |
| 70.28 | 0.39 | 13.1 | 1.02 | 0.607 | -1.16 | -- | -- | 0.0227 | 2.5 | 19.64 | 757 | -- | -- |
| 70.81 | 0.392 | 13 | 1.66 | -- | -1.5 | -- | 3.3 | 0.214 | -- | 21.79 | 321 | -- | -- |
| 97.24 | 0.462 | 13.1 | 0.7 | 0.682 | -- | -0.0744 | -- | -0.194 | 4.46 | -- | -- | -- | -- |
| 97.25 | 0.462 | 13.1 | 0.701 | 0.682 | -- | -- | -- | -0.193 | 4.48 | -- | -- | -- | -- |
| 76.12 | 0.406 | 13.1 | 1.08 | -- | -1.75 | -- | -- | 0.0644 | -- | 13.37 | 302 | -- | -- |
| 94.6 | 0.453 | 13.1 | -- | 0.57 | -0.833 | -- | -- | -0.153 | 2.89 | 21.4 | 703 | -- | -- |
| 122.12 | 0.516 | 13.1 | 0.728 | -- | -- | -- | -- | -0.175 | -- | -- | -- | -- | -- |
| 110.21 | 0.491 | 13.1 | -- | 0.695 | -- | -- | -- | -0.271 | 4.46 | -- | -- | -- | -- |
| 102.16 | 0.471 | 13.1 | -- | -- | -1.09 | -- | -- | -0.114 | -- | 21.93 | 290 | -- | -- |
| 136.09 | 0.545 | 13.1 | -- | -- | -- | -- | -- | -0.256 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 63.35 | temperature | 20 | 1440 | > th | dose dependent | rect. | 15 | 3 |
| 20 | 64.38 | wind | 7 | 43200 | < th | dose independent | rect. | 14 | 7 |
| 32 | 64.56 | wind | 5 | 43200 | > th | dose dependent | rect. | 14 | 7 |
| 33 | 64.56 | temperature | 20 | 720 | > th | dose dependent | rect. | 23 | 19 |
| 37 | 64.65 | radiation | 1 | 1440 | < th | dose dependent | sin | 16 | NA |
| 42 | 64.72 | radiation | 1 | 1440 | < th | dose dependent | rect. | 14 | 15 |
| 54 | 64.84 | radiation | 1 | 1440 | < th | dose dependent | rect. | 14 | 12 |
| 59 | 64.86 | radiation | 1 | 1440 | < th | dose dependent | rect. | 14 | 5 |
| 61 | 64.89 | wind | 7 | 43200 | > th | dose independent | rect. | 14 | 7 |
| 66 | 64.90 | radiation | 1 | 1440 | < th | dose dependent | rect. | 14 | 8 |
| 100 | 65.02 | radiation | 1 | 1440 | < th | dose dependent | rect. | 10 | 19 |
| 140 | 65.20 | temperature | 25 | 1440 | > th | dose independent | rect. | 10 | 13 |
| 144 | 65.22 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 3 |
| 158 | 65.25 | temperature | 25 | 1440 | < th | dose independent | rect. | 14 | 8 |
| 165 | 65.27 | radiation | 1 | 1440 | < th | dose dependent | rect. | 10 | 16 |
| 168 | 65.28 | temperature | 25 | 1440 | < th | dose independent | rect. | 11 | 12 |
| 169 | 65.28 | radiation | 1 | 1440 | < th | dose dependent | rect. | 10 | 9 |
| 173 | 65.28 | radiation | 1 | 1440 | < th | dose dependent | rect. | 10 | 14 |
| 194 | 65.31 | radiation | 1 | 1440 | < th | dose dependent | rect. | 10 | 12 |
| 218 | 65.37 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 3 |
| 222 | 65.39 | temperature | 25 | 1440 | > th | dose independent | rect. | 14 | 8 |
| 253 | 65.49 | temperature | 20 | 1440 | > th | dose dependent | sin | 17 | NA |
| 272 | 65.55 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 20 |
| 292 | 65.65 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 5 |
| 311 | 65.73 | wind | 7 | 43200 | < th | dose independent | rect. | 14 | 11 |
| 332 | 65.81 | wind | 5 | 43200 | > th | dose dependent | rect. | 13 | 12 |
| 355 | 65.88 | wind | 5 | 43200 | > th | dose independent | rect. | 13 | 9 |
| 373 | 65.97 | temperature | 25 | 1440 | < th | dose independent | sin | 19 | NA |
| 378 | 65.98 | temperature | 25 | 1440 | > th | dose independent | sin | 19 | NA |
| 418 | 66.10 | temperature | 20 | 720 | > th | dose dependent | rect. | 12 | 23 |
| 443 | 66.17 | radiation | 1 | 720 | < th | dose dependent | rect. | 5 | 22 |
| 465 | 66.23 | temperature | 30 | 1440 | < th | dose dependent | rect. | 15 | 4 |
| 481 | 66.28 | wind | 7 | 43200 | > th | dose independent | rect. | 15 | 1 |
| 495 | 66.32 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 1 |
| 548 | 66.43 | wind | 5 | 43200 | < th | dose independent | rect. | 11 | 11 |
| 614 | 66.58 | radiation | 1 | 720 | < th | dose dependent | rect. | 5 | 16 |
| 693 | 66.76 | temperature | 20 | 720 | > th | dose dependent | rect. | 3 | 23 |
| 705 | 66.80 | wind | 7 | 43200 | > th | dose independent | rect. | 14 | 16 |
| 707 | 66.80 | temperature | 20 | 720 | > th | dose dependent | no | NA | NA |
| 711 | 66.81 | wind | 5 | 43200 | > th | dose independent | sin | 18 | NA |
| 731 | 66.84 | radiation | 1 | 1440 | < th | dose independent | sin | 17 | NA |
| 749 | 66.87 | wind | 5 | 43200 | > th | dose independent | rect. | 11 | 7 |
| 761 | 66.88 | temperature | 20 | 720 | > th | dose dependent | rect. | 6 | 23 |
| 813 | 66.98 | radiation | 1 | 1440 | < th | dose independent | rect. | 13 | 15 |
| 818 | 66.99 | radiation | 1 | 1440 | < th | dose independent | rect. | 13 | 13 |
| 827 | 67.00 | radiation | 1 | 1440 | < th | dose independent | rect. | 13 | 11 |
| 837 | 67.01 | radiation | 1 | 1440 | < th | dose independent | rect. | 13 | 6 |
| 893 | 67.10 | wind | 5 | 43200 | < th | dose independent | sin | 18 | NA |
| 1000 | 67.26 | wind | 5 | 43200 | < th | dose independent | rect. | 11 | 7 |