Os01g0172400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Phospholipase D alpha 1 precursor (EC 3.1.4.4) (PLD alpha 1) (Choline phosphatase 1) (Phosphatidylcholine-hydrolyzing phospholipase D 1).
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Os01g0172400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Phospholipase D alpha 1 precursor (EC 3.1.4.4) (PLD alpha 1) (Choline phosphatase 1) (Phosphatidylcholine-hydrolyzing phospholipase D 1).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 19.02 | 0.205 | 14 | 0.346 | 0.238 | 0.288 | 0.0564 | -0.0828 | 0.394 | 16.3 | 20.1 | 520 | -- | -- |
| 19.04 | 0.203 | 14 | 0.356 | 0.237 | 0.297 | 0.0364 | -- | 0.395 | 16.2 | 20.1 | 519 | -- | -- |
| 19.02 | 0.203 | 14 | 0.349 | 0.238 | 0.291 | -- | -0.074 | 0.394 | 16.2 | 20.08 | 519 | -- | -- |
| 19.04 | 0.203 | 14 | 0.36 | 0.236 | 0.3 | -- | -- | 0.397 | 16.2 | 20.08 | 519 | -- | -- |
| 21.75 | 0.217 | 14 | 0.336 | -- | 0.329 | -- | -0.0509 | 0.389 | -- | 20 | 382 | -- | -- |
| 21.41 | 0.217 | 14 | 0.463 | 0.26 | -- | 0.139 | -- | 0.454 | 16.8 | -- | -- | -- | -- |
| 21.45 | 0.217 | 14 | 0.464 | 0.26 | -- | -- | -- | 0.455 | 16.6 | -- | -- | -- | -- |
| 21.75 | 0.217 | 14 | 0.342 | -- | 0.337 | -- | -- | 0.386 | -- | 20.07 | 382 | -- | -- |
| 20.73 | 0.212 | 14 | -- | 0.242 | 0.488 | -- | -- | 0.366 | 17 | 19.2 | 3224 | -- | -- |
| 25.05 | 0.234 | 14 | 0.454 | -- | -- | -- | -- | 0.448 | -- | -- | -- | -- | -- |
| 27.12 | 0.244 | 14 | -- | 0.252 | -- | -- | -- | 0.403 | 16.7 | -- | -- | -- | -- |
| 24.01 | 0.228 | 14 | -- | -- | 0.448 | -- | -- | 0.318 | -- | 17.5 | 22015 | -- | -- |
| 30.49 | 0.258 | 14 | -- | -- | -- | -- | -- | 0.398 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 18.45 | wind | 1 | 1440 | < th | dose dependent | rect. | 6 | 1 |
| 2 | 18.55 | wind | 1 | 1440 | < th | dose independent | rect. | 6 | 1 |
| 3 | 18.61 | wind | 1 | 1440 | > th | dose independent | rect. | 6 | 1 |
| 4 | 18.63 | temperature | 20 | 720 | > th | dose independent | rect. | 21 | 17 |
| 5 | 18.64 | humidity | 80 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 7 | 18.65 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 10 |
| 11 | 18.70 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 12 |
| 13 | 18.71 | wind | 3 | 43200 | < th | dose dependent | rect. | 5 | 1 |
| 23 | 18.77 | temperature | 20 | 270 | > th | dose independent | rect. | 10 | 22 |
| 26 | 18.79 | humidity | 80 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 35 | 18.83 | wind | 3 | 43200 | < th | dose dependent | rect. | 5 | 3 |
| 40 | 18.86 | temperature | 20 | 270 | > th | dose independent | rect. | 22 | 22 |
| 46 | 18.88 | temperature | 20 | 10 | > th | dose independent | rect. | 12 | 21 |
| 51 | 18.89 | temperature | 20 | 270 | > th | dose independent | rect. | 21 | 10 |
| 53 | 18.89 | temperature | 20 | 720 | > th | dose independent | rect. | 19 | 14 |
| 59 | 18.91 | radiation | 10 | 4320 | > th | dose dependent | rect. | 6 | 1 |
| 60 | 18.92 | temperature | 20 | 720 | > th | dose independent | rect. | 19 | 12 |
| 80 | 18.93 | temperature | 20 | 1440 | < th | dose dependent | rect. | 3 | 2 |
| 82 | 18.94 | temperature | 20 | 720 | > th | dose independent | sin | 8 | NA |
| 104 | 18.97 | wind | 3 | 14400 | < th | dose dependent | rect. | 23 | 3 |
| 108 | 18.97 | wind | 1 | 43200 | < th | dose dependent | rect. | 3 | 10 |
| 115 | 18.99 | temperature | 20 | 720 | > th | dose independent | rect. | 4 | 20 |
| 126 | 19.00 | temperature | 20 | 720 | < th | dose independent | rect. | 8 | 20 |
| 146 | 19.02 | radiation | 1 | 1440 | > th | dose independent | rect. | 10 | 3 |
| 163 | 19.03 | wind | 1 | 14400 | > th | dose dependent | rect. | 23 | 3 |
| 169 | 19.04 | humidity | 80 | 14400 | > th | dose dependent | rect. | 13 | 1 |
| 179 | 19.05 | wind | 1 | 43200 | > th | dose independent | rect. | 3 | 9 |
| 184 | 19.05 | temperature | 20 | 10 | > th | dose independent | rect. | 21 | 23 |
| 192 | 19.06 | temperature | 20 | 1440 | < th | dose independent | rect. | 22 | 13 |
| 218 | 19.08 | temperature | 20 | 1440 | > th | dose independent | rect. | 6 | 1 |
| 219 | 19.08 | temperature | 20 | 1440 | < th | dose independent | rect. | 22 | 1 |
| 221 | 19.08 | temperature | 30 | 4320 | < th | dose independent | rect. | 21 | 12 |
| 257 | 19.10 | wind | 1 | 43200 | > th | dose independent | rect. | 5 | 7 |
| 281 | 19.11 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 3 |
| 313 | 19.12 | wind | 7 | 4320 | < th | dose independent | rect. | 9 | 2 |
| 315 | 19.12 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 2 |
| 318 | 19.12 | wind | 1 | 43200 | < th | dose independent | rect. | 3 | 10 |
| 319 | 19.12 | wind | 1 | 14400 | > th | dose independent | rect. | 20 | 11 |
| 342 | 19.12 | temperature | 30 | 720 | < th | dose dependent | rect. | 23 | 4 |
| 347 | 19.13 | temperature | 20 | 1440 | < th | dose independent | sin | 6 | NA |
| 350 | 19.13 | wind | 1 | 14400 | > th | dose independent | rect. | 23 | 6 |
| 351 | 19.13 | wind | 1 | 14400 | > th | dose independent | rect. | 23 | 8 |
| 355 | 19.13 | temperature | 30 | 4320 | < th | dose independent | rect. | 19 | 14 |
| 363 | 19.13 | temperature | 10 | 720 | > th | dose dependent | sin | 10 | NA |
| 382 | 19.14 | wind | 1 | 43200 | > th | dose independent | rect. | 24 | 13 |
| 385 | 19.14 | temperature | 20 | 720 | < th | dose independent | rect. | 14 | 14 |
| 409 | 19.15 | temperature | 20 | 1440 | > th | dose independent | rect. | 22 | 1 |
| 410 | 19.15 | wind | 3 | 43200 | < th | dose independent | rect. | 6 | 2 |
| 417 | 19.15 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 9 |
| 419 | 19.15 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 9 |
| 478 | 19.16 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 6 |
| 488 | 19.17 | wind | 1 | 14400 | < th | dose independent | rect. | 20 | 11 |
| 513 | 19.17 | temperature | 20 | 270 | < th | dose independent | rect. | 21 | 22 |
| 520 | 19.17 | wind | 3 | 14400 | > th | dose dependent | rect. | 7 | 2 |
| 523 | 19.17 | wind | 1 | 43200 | < th | dose dependent | rect. | 5 | 8 |
| 560 | 19.19 | wind | 1 | 14400 | < th | dose independent | rect. | 23 | 6 |
| 566 | 19.19 | wind | 1 | 14400 | < th | dose independent | rect. | 23 | 8 |
| 599 | 19.20 | wind | 3 | 14400 | > th | dose independent | rect. | 8 | 1 |
| 600 | 19.20 | wind | 7 | 4320 | > th | dose independent | rect. | 9 | 2 |
| 613 | 19.20 | wind | 1 | 43200 | < th | dose independent | rect. | 24 | 13 |
| 652 | 19.21 | wind | 1 | 43200 | > th | dose independent | sin | 5 | NA |
| 653 | 19.21 | temperature | 20 | 720 | > th | dose independent | no | NA | NA |
| 683 | 19.21 | wind | 1 | 43200 | < th | dose dependent | rect. | 12 | 1 |
| 684 | 19.21 | temperature | 30 | 4320 | > th | dose dependent | rect. | 8 | 1 |
| 743 | 19.22 | temperature | 20 | 270 | < th | dose independent | rect. | 13 | 22 |
| 766 | 19.23 | temperature | 20 | 720 | < th | dose independent | no | NA | NA |
| 811 | 19.23 | temperature | 20 | 720 | < th | dose independent | rect. | 3 | 23 |
| 850 | 19.24 | temperature | 20 | 10 | > th | dose independent | sin | 6 | NA |
| 851 | 19.24 | temperature | 20 | 270 | < th | dose independent | sin | 10 | NA |
| 852 | 19.24 | temperature | 30 | 4320 | > th | dose independent | rect. | 8 | 1 |
| 908 | 19.24 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 18 |
| 912 | 19.25 | wind | 1 | 14400 | > th | dose independent | rect. | 24 | 3 |
| 958 | 19.25 | temperature | 20 | 720 | > th | dose independent | rect. | 15 | 23 |