Os01g0171000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Leucine-rich repeat receptor-like kinase.
FiT-DB / Search/ Help/ Sample detail
|
Os01g0171000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Similar to Leucine-rich repeat receptor-like kinase.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 169.96 | 0.613 | 10.1 | -2.67 | 1.14 | 1.42 | 0.238 | -1.81 | -0.735 | 0.206 | 24.83 | 1231 | -- | -- |
| 171.1 | 0.609 | 10 | -2.22 | 1.15 | 1.24 | 0.0886 | -- | -0.617 | 0.151 | 24.8 | 1234 | -- | -- |
| 170.17 | 0.608 | 10.1 | -2.64 | 1.14 | 1.41 | -- | -1.65 | -0.73 | 0.138 | 24.8 | 1231 | -- | -- |
| 171.15 | 0.609 | 10 | -2.22 | 1.15 | 1.24 | -- | -- | -0.615 | 0.124 | 24.8 | 1235 | -- | -- |
| 232.25 | 0.71 | 10.1 | -2.89 | -- | 2.05 | -- | -2.52 | -0.778 | -- | 24.31 | 1047 | -- | -- |
| 224.23 | 0.702 | 9.98 | -1.81 | 1.37 | -- | 0.434 | -- | -0.465 | 0.409 | -- | -- | -- | -- |
| 224.99 | 0.702 | 9.98 | -1.83 | 1.37 | -- | -- | -- | -0.466 | 0.323 | -- | -- | -- | -- |
| 235.78 | 0.715 | 10 | -2.31 | -- | 1.84 | -- | -- | -0.694 | -- | 24.1 | 1036 | -- | -- |
| 291.6 | 0.795 | 9.97 | -- | 1.23 | 0.699 | -- | -- | -0.358 | 0.174 | 25.47 | 1224 | -- | -- |
| 342.23 | 0.864 | 9.95 | -1.78 | -- | -- | -- | -- | -0.445 | -- | -- | -- | -- | -- |
| 313 | 0.828 | 9.94 | -- | 1.34 | -- | -- | -- | -0.263 | 0.252 | -- | -- | -- | -- |
| 367.13 | 0.892 | 9.94 | -- | -- | 1.33 | -- | -- | -0.36 | -- | 24.49 | 1020 | -- | -- |
| 425.97 | 0.963 | 9.91 | -- | -- | -- | -- | -- | -0.247 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 160.83 | humidity | 70.0 | 14400 | < th | dose independent | rect. | 19 | 1 |
| 2 | 160.86 | humidity | 70.0 | 14400 | > th | dose independent | rect. | 19 | 12 |
| 3 | 161.04 | humidity | 70.0 | 14400 | > th | dose independent | rect. | 19 | 5 |
| 5 | 161.08 | humidity | 70.0 | 14400 | > th | dose independent | rect. | 19 | 2 |
| 9 | 161.12 | humidity | 70.0 | 14400 | > th | dose independent | rect. | 19 | 8 |
| 13 | 161.20 | humidity | 70.0 | 14400 | < th | dose independent | rect. | 19 | 12 |
| 25 | 162.16 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 13 | 12 |
| 26 | 162.34 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 15 | 10 |
| 32 | 163.27 | radiation | 10.0 | 14400 | < th | dose independent | rect. | 16 | 14 |
| 40 | 163.95 | radiation | 10.0 | 14400 | < th | dose independent | rect. | 16 | 8 |
| 42 | 163.96 | radiation | 10.0 | 14400 | < th | dose independent | rect. | 16 | 5 |
| 48 | 163.97 | radiation | 10.0 | 14400 | < th | dose independent | rect. | 16 | 3 |
| 59 | 164.34 | temperature | 15.0 | 720 | > th | dose dependent | sin | 16 | NA |
| 60 | 164.39 | radiation | 30.0 | 14400 | < th | dose independent | rect. | 15 | 17 |
| 66 | 164.75 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 9 | 2 |
| 68 | 164.80 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 20 | 2 |
| 79 | 165.19 | radiation | 10.0 | 14400 | > th | dose dependent | rect. | 16 | 15 |
| 82 | 165.22 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 23 | 1 |
| 119 | 165.74 | radiation | 1.0 | 14400 | > th | dose dependent | rect. | 17 | 13 |
| 121 | 165.78 | radiation | 10.0 | 14400 | < th | dose independent | sin | 14 | NA |
| 142 | 166.28 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 149 | 166.38 | radiation | 30.0 | 14400 | < th | dose independent | rect. | 15 | 9 |
| 152 | 166.40 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 23 | 1 |
| 153 | 166.40 | radiation | 30.0 | 14400 | < th | dose independent | rect. | 15 | 6 |
| 158 | 166.42 | radiation | 30.0 | 14400 | < th | dose independent | rect. | 15 | 4 |
| 167 | 166.50 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 20 | 5 |
| 170 | 166.54 | radiation | 1.0 | 14400 | > th | dose dependent | rect. | 17 | 2 |
| 180 | 166.57 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 19 | 8 |
| 186 | 166.61 | radiation | 20.0 | 14400 | > th | dose dependent | rect. | 15 | 17 |
| 187 | 166.65 | wind | 5.0 | 43200 | > th | dose independent | rect. | 10 | 2 |
| 207 | 166.86 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 22 | 3 |
| 211 | 166.87 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 9 | 14 |
| 218 | 166.94 | wind | 5.0 | 43200 | < th | dose independent | rect. | 10 | 2 |
| 221 | 166.96 | wind | 5.0 | 43200 | > th | dose independent | rect. | 5 | 9 |
| 244 | 167.07 | wind | 5.0 | 43200 | < th | dose independent | rect. | 5 | 9 |
| 267 | 167.20 | wind | 5.0 | 43200 | > th | dose independent | rect. | 7 | 7 |
| 275 | 167.24 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 17 | 5 |
| 277 | 167.25 | radiation | 40.0 | 14400 | < th | dose dependent | rect. | 17 | 13 |
| 296 | 167.33 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 17 | 12 |
| 311 | 167.41 | wind | 5.0 | 43200 | > th | dose independent | rect. | 8 | 5 |
| 335 | 167.47 | radiation | 1.0 | 720 | > th | dose independent | sin | 14 | NA |
| 338 | 167.48 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 9 | 2 |
| 372 | 167.59 | radiation | 40.0 | 14400 | < th | dose dependent | rect. | 17 | 7 |
| 398 | 167.65 | radiation | 40.0 | 14400 | < th | dose dependent | rect. | 17 | 4 |
| 414 | 167.71 | temperature | 20.0 | 43200 | > th | dose independent | rect. | 19 | 1 |
| 418 | 167.72 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 20 | 2 |
| 448 | 167.80 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 18 | 4 |
| 454 | 167.82 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 470 | 167.87 | temperature | 25.0 | 14400 | > th | dose dependent | rect. | 17 | 8 |
| 501 | 168.00 | temperature | 25.0 | 14400 | < th | dose independent | sin | 12 | NA |
| 505 | 168.01 | temperature | 25.0 | 43200 | < th | dose dependent | rect. | 17 | 1 |
| 508 | 168.03 | temperature | 25.0 | 14400 | > th | dose independent | sin | 12 | NA |
| 514 | 168.06 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 9 | 13 |
| 527 | 168.09 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 20 | 1 |
| 549 | 168.12 | humidity | 60.0 | 43200 | > th | dose independent | rect. | 15 | 1 |
| 593 | 168.19 | temperature | 25.0 | 14400 | > th | dose dependent | rect. | 20 | 1 |
| 597 | 168.20 | wind | 5.0 | 43200 | > th | dose independent | rect. | 19 | 19 |
| 629 | 168.26 | radiation | 40.0 | 1440 | < th | dose dependent | rect. | 16 | 4 |
| 637 | 168.27 | wind | 5.0 | 43200 | < th | dose independent | rect. | 19 | 19 |
| 641 | 168.27 | radiation | 40.0 | 1440 | < th | dose dependent | rect. | 16 | 8 |
| 649 | 168.29 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 9 | 14 |
| 673 | 168.37 | wind | 5.0 | 43200 | < th | dose independent | rect. | 24 | 14 |
| 707 | 168.43 | radiation | 40.0 | 1440 | < th | dose dependent | rect. | 16 | 11 |
| 710 | 168.44 | radiation | 40.0 | 1440 | < th | dose dependent | rect. | 16 | 1 |
| 715 | 168.45 | temperature | 25.0 | 14400 | > th | dose dependent | sin | 12 | NA |
| 723 | 168.46 | humidity | 90.0 | 720 | < th | dose independent | rect. | 15 | 9 |
| 725 | 168.46 | wind | 5.0 | 43200 | > th | dose independent | rect. | 24 | 14 |
| 749 | 168.51 | temperature | 25.0 | 720 | > th | dose dependent | sin | 13 | NA |
| 756 | 168.53 | temperature | 15.0 | 43200 | > th | dose dependent | rect. | 17 | 1 |
| 806 | 168.62 | radiation | 40.0 | 14400 | < th | dose independent | sin | 13 | NA |
| 841 | 168.71 | humidity | 90.0 | 43200 | > th | dose dependent | sin | 20 | NA |
| 845 | 168.72 | wind | 5.0 | 43200 | < th | dose independent | sin | 5 | NA |
| 883 | 168.77 | humidity | 60.0 | 43200 | > th | dose independent | rect. | 14 | 3 |
| 887 | 168.77 | radiation | 1.0 | 14400 | > th | dose dependent | rect. | 4 | 2 |
| 900 | 168.78 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 14 | 5 |
| 913 | 168.80 | wind | 5.0 | 43200 | > th | dose independent | sin | 5 | NA |
| 942 | 168.87 | radiation | 1.0 | 1440 | > th | dose dependent | rect. | 16 | 1 |
| 993 | 168.93 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 14 | 5 |
| 996 | 168.93 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 14 | 5 |