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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0170300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein kinase-like domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.48 (0.0685) R2 : 0.604
β1 : -4.93 (0.25) R2dD : 0.359 R2D : 0.303
β2 : 1.83 (0.176) R2dC : 0.0945 R2C : 0.0745
β3 : 2.17 (0.268) R2dE : 0.0653 R2E : 0.13
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -1.31 (0.153) R2dN8 : 0.0967 R2N8 : 0.0523
σ : 1.26
deviance : 733.88
__
_____
C
peak time of C : 6.62
E
wheather : wind
threshold : 3.161
memory length : 4407
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 8.38
open length of G : 0.545

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
715.75 1.26 5.46 -4.87 1.84 1.91 2.33 -1.81 -1.31 6.59 3.163 4395 8.37 0.495
720.55 1.25 5.48 -4.97 1.81 2.14 2.24 -- -1.32 6.65 3.162 4407 8.38 0.534
728.97 1.26 5.46 -4.84 1.84 1.95 -- -1.72 -1.31 6.63 3.159 4403 8.37 0.484
733.88 1.26 5.48 -4.93 1.83 2.17 -- -- -1.31 6.62 3.161 4407 8.38 0.545
900.74 1.4 5.48 -4.83 -- 2.47 -- -1.68 -1.18 -- 3.2 4416 8.37 0.517
826.23 1.35 5.56 -5.28 1.94 -- 2.29 -- -1.73 6.52 -- -- -- --
839.32 1.36 5.57 -5.25 1.94 -- -- -- -1.74 6.57 -- -- -- --
903.75 1.4 5.5 -4.83 -- 2.71 -- -- -1.23 -- 3.155 4438 8.4 0.522
1137.54 1.57 5.48 -- 1.67 2.84 -- -- -1.06 6.89 3.862 41716 8.4 0.449
1036.32 1.5 5.61 -5.2 -- -- -- -- -1.7 -- -- -- -- --
1565.96 1.85 5.44 -- 1.88 -- -- -- -1.15 6.73 -- -- -- --
1228.78 1.63 5.32 -- -- 3.13 -- -- -0.613 -- 5.8 47520 7.73 0.567
1750.54 1.95 5.48 -- -- -- -- -- -1.12 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 736.65 wind 3 4320 > th dose independent rect. 8 1
2 740.25 wind 3 4320 < th dose independent rect. 8 1
4 751.05 wind 3 4320 > th dose independent rect. 5 4
5 751.90 wind 3 4320 < th dose independent rect. 5 4
8 754.15 wind 7 43200 > th dose dependent rect. 15 2
12 755.19 wind 7 43200 > th dose dependent rect. 15 4
13 755.20 humidity 70 720 > th dose independent rect. 19 9
15 755.54 humidity 90 14400 < th dose independent rect. 3 2
17 756.20 wind 1 43200 < th dose dependent rect. 9 3
20 757.01 wind 7 43200 > th dose independent rect. 16 2
21 757.18 wind 7 43200 < th dose independent rect. 16 2
23 757.63 wind 7 43200 > th dose independent rect. 16 4
25 757.71 wind 9 14400 > th dose dependent rect. 17 21
26 757.76 wind 5 4320 < th dose dependent rect. 8 1
29 758.13 wind 7 43200 < th dose independent rect. 16 4
37 758.76 humidity 70 720 > th dose dependent rect. 20 1
39 758.86 wind 1 4320 > th dose dependent rect. 8 1
42 759.04 wind 5 4320 < th dose dependent rect. 5 4
51 759.38 humidity 70 720 > th dose independent rect. 17 14
68 760.42 wind 1 43200 < th dose independent rect. 8 4
78 760.84 wind 9 14400 < th dose independent rect. 18 21
79 760.88 humidity 70 720 < th dose independent rect. 17 3
93 761.10 wind 3 43200 > th dose dependent rect. 13 1
98 761.43 wind 9 14400 > th dose dependent sin 17 NA
103 761.56 wind 9 14400 > th dose independent rect. 17 22
108 761.71 radiation 10 1440 < th dose dependent rect. 11 16
109 761.72 radiation 10 1440 < th dose dependent rect. 11 14
111 761.75 wind 3 4320 < th dose dependent rect. 6 1
114 761.81 radiation 10 1440 < th dose dependent rect. 11 8
115 761.87 wind 1 4320 > th dose dependent rect. 5 4
132 762.31 humidity 60 1440 > th dose independent rect. 15 2
135 762.38 wind 1 14400 > th dose independent rect. 1 1
139 762.45 wind 1 14400 < th dose independent rect. 1 1
144 762.55 wind 9 14400 > th dose dependent rect. 12 23
151 762.71 wind 3 43200 > th dose dependent rect. 12 3
160 762.86 humidity 90 43200 > th dose independent rect. 4 2
161 762.92 humidity 70 1440 < th dose dependent rect. 15 4
165 763.08 wind 1 14400 < th dose independent rect. 24 3
167 763.10 wind 1 14400 > th dose independent rect. 24 3
168 763.13 wind 9 14400 > th dose dependent rect. 9 16
169 763.13 wind 9 14400 > th dose dependent rect. 12 16
171 763.13 wind 9 14400 > th dose dependent rect. 9 19
179 763.15 wind 9 14400 > th dose dependent rect. 12 13
189 763.19 humidity 60 1440 > th dose independent rect. 15 4
198 763.27 wind 9 14400 < th dose independent rect. 13 22
215 763.35 humidity 60 1440 > th dose independent rect. 15 19
245 763.58 wind 1 43200 > th dose independent rect. 8 5
248 763.59 wind 9 14400 < th dose independent sin 17 NA
249 763.59 wind 9 14400 < th dose independent rect. 13 10
255 763.64 wind 9 14400 > th dose independent sin 17 NA
263 763.77 wind 7 43200 < th dose independent rect. 14 16
272 763.82 humidity 60 1440 > th dose independent rect. 15 14
273 763.83 wind 9 14400 < th dose independent rect. 12 14
276 763.85 humidity 60 1440 > th dose independent rect. 15 16
286 763.88 humidity 60 1440 > th dose independent rect. 15 10
292 763.90 radiation 10 1440 > th dose independent rect. 11 2
304 763.95 humidity 60 1440 > th dose independent rect. 15 7
309 763.97 wind 9 14400 > th dose dependent no NA NA
327 764.03 wind 9 14400 > th dose dependent rect. 24 23
330 764.06 wind 9 14400 < th dose independent rect. 12 16
335 764.08 wind 9 14400 < th dose independent rect. 12 18
353 764.14 radiation 10 1440 < th dose dependent sin 18 NA
358 764.17 wind 9 14400 > th dose dependent rect. 22 23
374 764.28 humidity 70 720 > th dose independent rect. 17 5
380 764.31 wind 9 14400 < th dose independent rect. 5 18
392 764.38 wind 9 14400 < th dose independent rect. 5 16
395 764.39 wind 9 14400 < th dose independent rect. 9 14
397 764.40 wind 7 43200 > th dose independent rect. 14 16
435 764.52 wind 9 14400 < th dose independent rect. 5 21
440 764.53 wind 3 43200 > th dose dependent rect. 13 17
477 764.61 wind 9 14400 < th dose independent rect. 9 17
499 764.68 humidity 60 1440 < th dose independent rect. 15 2
525 764.74 wind 7 43200 > th dose independent rect. 14 18
546 764.81 wind 9 14400 > th dose independent rect. 13 22
560 764.85 wind 9 14400 < th dose independent rect. 9 21
563 764.86 wind 9 14400 > th dose independent rect. 13 12
620 765.02 wind 9 14400 > th dose independent rect. 13 10
679 765.21 wind 9 14400 < th dose independent rect. 1 22
681 765.21 wind 9 14400 < th dose independent rect. 22 23
765 765.42 wind 9 14400 < th dose independent no NA NA
827 765.68 temperature 30 43200 > th dose dependent rect. 8 1
845 765.73 humidity 70 720 > th dose independent rect. 19 2
852 765.80 wind 9 43200 < th dose dependent rect. 13 1
892 766.00 wind 9 4320 < th dose dependent rect. 6 1
918 766.05 wind 9 43200 < th dose dependent rect. 11 4
920 766.06 humidity 60 1440 < th dose independent rect. 15 19
926 766.11 wind 9 14400 > th dose independent rect. 9 16
932 766.13 wind 1 90 < th dose independent rect. 23 2
940 766.15 wind 9 14400 > th dose independent rect. 9 19
977 766.24 wind 9 14400 < th dose independent rect. 20 23