Os01g0168600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Auxin-independent growth promoter-like protein.
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Os01g0168600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Auxin-independent growth promoter-like protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 43.28 | 0.309 | 9.74 | -0.644 | 0.266 | 0.39 | -0.238 | 0.00791 | 0.0201 | 0.174 | 24.66 | 347 | -- | -- |
| 43.28 | 0.306 | 9.74 | -0.642 | 0.267 | 0.39 | -0.239 | -- | 0.0208 | 0.173 | 24.66 | 346 | -- | -- |
| 43.52 | 0.307 | 9.74 | -0.626 | 0.267 | 0.389 | -- | -0.024 | 0.0228 | 0.202 | 24.6 | 346 | -- | -- |
| 43.53 | 0.307 | 9.74 | -0.633 | 0.267 | 0.388 | -- | -- | 0.0202 | 0.202 | 24.65 | 346 | -- | -- |
| 47.16 | 0.32 | 9.73 | -0.599 | -- | 0.406 | -- | -0.101 | 0.0556 | -- | 24.6 | 251 | -- | -- |
| 50.9 | 0.334 | 9.78 | -0.765 | 0.366 | -- | -0.157 | -- | -0.164 | 2.5 | -- | -- | -- | -- |
| 50.99 | 0.334 | 9.78 | -0.761 | 0.366 | -- | -- | -- | -0.163 | 2.54 | -- | -- | -- | -- |
| 47.2 | 0.32 | 9.73 | -0.624 | -- | 0.402 | -- | -- | 0.0487 | -- | 24.54 | 244 | -- | -- |
| 53.73 | 0.341 | 9.72 | -- | 0.212 | 0.47 | -- | -- | 0.1 | 23.3 | 24.69 | 346 | -- | -- |
| 58.86 | 0.358 | 9.78 | -0.746 | -- | -- | -- | -- | -0.154 | -- | -- | -- | -- | -- |
| 66.25 | 0.381 | 9.76 | -- | 0.351 | -- | -- | -- | -0.0787 | 2.51 | -- | -- | -- | -- |
| 56.99 | 0.352 | 9.71 | -- | -- | 0.48 | -- | -- | 0.15 | -- | 24.46 | 252 | -- | -- |
| 73.52 | 0.4 | 9.76 | -- | -- | -- | -- | -- | -0.0716 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 39.08 | temperature | 10 | 270 | > th | dose dependent | rect. | 7 | 21 |
| 2 | 39.18 | temperature | 10 | 270 | > th | dose dependent | rect. | 8 | 19 |
| 11 | 40.40 | temperature | 15 | 270 | > th | dose dependent | rect. | 22 | 16 |
| 29 | 40.76 | temperature | 15 | 10 | > th | dose dependent | rect. | 10 | 19 |
| 86 | 41.50 | temperature | 30 | 270 | < th | dose dependent | rect. | 3 | 19 |
| 118 | 41.80 | temperature | 25 | 270 | > th | dose independent | rect. | 22 | 17 |
| 180 | 42.21 | temperature | 30 | 90 | < th | dose dependent | rect. | 5 | 18 |
| 227 | 42.45 | temperature | 30 | 270 | < th | dose dependent | rect. | 3 | 7 |
| 241 | 42.54 | temperature | 30 | 270 | < th | dose dependent | rect. | 15 | 19 |
| 268 | 42.64 | temperature | 15 | 270 | > th | dose dependent | rect. | 22 | 5 |
| 286 | 42.68 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 23 |
| 310 | 42.77 | temperature | 10 | 270 | > th | dose dependent | rect. | 7 | 9 |
| 317 | 42.83 | temperature | 30 | 90 | < th | dose independent | rect. | 5 | 18 |
| 344 | 42.95 | temperature | 25 | 270 | < th | dose independent | rect. | 16 | 19 |
| 354 | 43.01 | temperature | 20 | 270 | > th | dose dependent | sin | 6 | NA |
| 388 | 43.12 | temperature | 25 | 4320 | < th | dose independent | rect. | 21 | 4 |
| 389 | 43.12 | temperature | 25 | 4320 | < th | dose independent | rect. | 20 | 6 |
| 403 | 43.16 | temperature | 25 | 4320 | > th | dose independent | rect. | 20 | 5 |
| 409 | 43.17 | temperature | 25 | 270 | < th | dose independent | rect. | 3 | 7 |
| 427 | 43.22 | temperature | 30 | 270 | < th | dose independent | rect. | 3 | 18 |
| 428 | 43.22 | temperature | 10 | 270 | > th | dose dependent | sin | 6 | NA |
| 447 | 43.28 | temperature | 25 | 270 | < th | dose independent | sin | 7 | NA |
| 449 | 43.28 | temperature | 30 | 270 | < th | dose dependent | rect. | 3 | 10 |
| 481 | 43.34 | temperature | 15 | 10 | > th | dose dependent | rect. | 24 | 16 |
| 488 | 43.35 | temperature | 30 | 270 | < th | dose independent | rect. | 3 | 16 |
| 519 | 43.42 | temperature | 30 | 270 | < th | dose dependent | sin | 7 | NA |
| 537 | 43.44 | temperature | 30 | 270 | < th | dose dependent | no | NA | NA |
| 574 | 43.50 | temperature | 25 | 270 | < th | dose independent | rect. | 1 | 22 |
| 586 | 43.52 | temperature | 20 | 4320 | > th | dose dependent | rect. | 24 | 1 |
| 601 | 43.56 | atmosphere | 1000 | 270 | > th | dose dependent | rect. | 3 | 5 |
| 605 | 43.57 | radiation | 40 | 270 | < th | dose dependent | rect. | 3 | 7 |
| 611 | 43.58 | temperature | 10 | 90 | > th | dose dependent | no | NA | NA |
| 615 | 43.59 | temperature | 30 | 90 | < th | dose independent | rect. | 5 | 14 |
| 625 | 43.61 | temperature | 25 | 1440 | > th | dose independent | rect. | 7 | 2 |
| 634 | 43.62 | temperature | 10 | 4320 | > th | dose dependent | rect. | 20 | 5 |
| 635 | 43.62 | temperature | 30 | 4320 | < th | dose dependent | rect. | 20 | 5 |
| 639 | 43.62 | temperature | 30 | 10 | < th | dose dependent | rect. | 5 | 19 |
| 643 | 43.63 | temperature | 25 | 1440 | < th | dose independent | rect. | 23 | 12 |
| 644 | 43.63 | temperature | 25 | 270 | > th | dose independent | rect. | 7 | 22 |
| 661 | 43.65 | temperature | 10 | 4320 | > th | dose dependent | rect. | 21 | 1 |
| 675 | 43.66 | temperature | 30 | 4320 | < th | dose dependent | rect. | 21 | 1 |
| 681 | 43.66 | temperature | 20 | 90 | > th | dose dependent | rect. | 23 | 23 |
| 683 | 43.67 | temperature | 25 | 1440 | > th | dose independent | rect. | 23 | 12 |
| 713 | 43.69 | temperature | 25 | 1440 | < th | dose independent | rect. | 7 | 1 |
| 765 | 43.72 | temperature | 25 | 270 | > th | dose independent | sin | 7 | NA |
| 857 | 43.77 | temperature | 30 | 10 | < th | dose dependent | rect. | 6 | 17 |
| 878 | 43.79 | temperature | 20 | 270 | > th | dose independent | rect. | 22 | 5 |
| 933 | 43.82 | atmosphere | 1000 | 270 | > th | dose dependent | rect. | 4 | 3 |
| 943 | 43.83 | humidity | 70 | 270 | > th | dose independent | rect. | 3 | 8 |
| 966 | 43.85 | temperature | 25 | 4320 | < th | dose independent | sin | 14 | NA |
| 988 | 43.86 | atmosphere | 1005 | 10 | > th | dose dependent | rect. | 5 | 5 |