Os01g0168300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os01g0168300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 20.08 | 0.211 | 9.99 | 0.867 | 0.436 | -0.601 | -0.748 | 1.23 | 0.193 | 18.9 | 26.7 | 1504 | -- | -- |
| 22.42 | 0.221 | 10 | 0.662 | 0.353 | -0.491 | -0.705 | -- | 0.0751 | 19.3 | 26.8 | 1424 | -- | -- |
| 21.53 | 0.216 | 9.99 | 0.884 | 0.435 | -0.599 | -- | 1.25 | 0.193 | 18.9 | 26.7 | 1504 | -- | -- |
| 22.8 | 0.222 | 10 | 0.55 | 0.388 | -0.528 | -- | -- | 0.103 | 18.9 | 26.8 | 1504 | -- | -- |
| 30.94 | 0.259 | 9.98 | 0.888 | -- | -0.609 | -- | 1.27 | 0.19 | -- | 26.7 | 1395 | -- | -- |
| 30.41 | 0.259 | 10.1 | 0.308 | 0.423 | -- | -0.701 | -- | -0.046 | 18.9 | -- | -- | -- | -- |
| 31.68 | 0.264 | 10.1 | 0.321 | 0.422 | -- | -- | -- | -0.0476 | 18.9 | -- | -- | -- | -- |
| 31.79 | 0.263 | 10 | 0.5 | -- | -0.511 | -- | -- | 0.0829 | -- | 26.7 | 1395 | -- | -- |
| 28.7 | 0.25 | 10.1 | -- | 0.473 | -0.37 | -- | -- | -0.00718 | 18.9 | 27.01 | 1793 | -- | -- |
| 41.01 | 0.299 | 10.1 | 0.312 | -- | -- | -- | -- | -0.0557 | -- | -- | -- | -- | -- |
| 34.41 | 0.274 | 10.1 | -- | 0.418 | -- | -- | -- | -0.0834 | 18.9 | -- | -- | -- | -- |
| 37.5 | 0.285 | 10 | -- | -- | -0.375 | -- | -- | -0.0089 | -- | 27.3 | 7190 | -- | -- |
| 43.59 | 0.308 | 10.1 | -- | -- | -- | -- | -- | -0.0903 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 19.94 | temperature | 20 | 720 | > th | dose dependent | sin | 6 | NA |
| 2 | 20.01 | temperature | 10 | 720 | > th | dose dependent | sin | 5 | NA |
| 4 | 20.01 | temperature | 20 | 720 | > th | dose dependent | rect. | 3 | 8 |
| 8 | 20.10 | temperature | 10 | 720 | > th | dose dependent | rect. | 2 | 9 |
| 9 | 20.11 | temperature | 30 | 720 | < th | dose dependent | rect. | 4 | 6 |
| 13 | 20.16 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 14 |
| 16 | 20.18 | temperature | 20 | 720 | > th | dose dependent | rect. | 22 | 15 |
| 24 | 20.23 | temperature | 30 | 720 | < th | dose dependent | sin | 5 | NA |
| 32 | 20.28 | temperature | 25 | 1440 | > th | dose dependent | rect. | 7 | 13 |
| 63 | 20.33 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 12 |
| 80 | 20.36 | temperature | 20 | 1440 | > th | dose dependent | rect. | 6 | 3 |
| 81 | 20.36 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 5 |
| 86 | 20.37 | temperature | 25 | 1440 | > th | dose dependent | rect. | 16 | 3 |
| 90 | 20.38 | temperature | 25 | 1440 | > th | dose dependent | sin | 22 | NA |
| 92 | 20.38 | temperature | 25 | 1440 | > th | dose dependent | rect. | 18 | 1 |
| 95 | 20.38 | temperature | 30 | 720 | < th | dose dependent | rect. | 3 | 10 |
| 142 | 20.44 | temperature | 10 | 1440 | > th | dose dependent | rect. | 7 | 2 |
| 151 | 20.45 | temperature | 30 | 1440 | < th | dose dependent | rect. | 7 | 2 |
| 205 | 20.49 | temperature | 30 | 720 | < th | dose dependent | rect. | 21 | 16 |
| 228 | 20.50 | temperature | 25 | 1440 | > th | dose dependent | rect. | 12 | 23 |
| 270 | 20.53 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 308 | 20.54 | temperature | 25 | 1440 | > th | dose dependent | rect. | 10 | 23 |
| 360 | 20.58 | temperature | 25 | 1440 | > th | dose dependent | rect. | 18 | 23 |
| 463 | 20.64 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 535 | 20.67 | wind | 7 | 43200 | > th | dose dependent | rect. | 9 | 6 |
| 627 | 20.73 | wind | 9 | 43200 | < th | dose independent | rect. | 19 | 20 |
| 672 | 20.76 | humidity | 90 | 43200 | > th | dose dependent | rect. | 22 | 1 |
| 719 | 20.79 | humidity | 90 | 43200 | > th | dose independent | rect. | 22 | 1 |
| 723 | 20.79 | radiation | 1 | 14400 | < th | dose dependent | rect. | 3 | 2 |
| 752 | 20.81 | temperature | 25 | 4320 | < th | dose independent | rect. | 6 | 7 |
| 756 | 20.81 | wind | 7 | 43200 | > th | dose dependent | rect. | 5 | 10 |
| 799 | 20.83 | wind | 7 | 43200 | > th | dose dependent | rect. | 24 | 15 |
| 838 | 20.86 | wind | 9 | 43200 | > th | dose independent | rect. | 19 | 20 |
| 854 | 20.87 | wind | 9 | 43200 | < th | dose independent | rect. | 8 | 7 |
| 876 | 20.88 | temperature | 25 | 4320 | > th | dose independent | rect. | 6 | 8 |
| 945 | 20.92 | wind | 9 | 43200 | > th | dose independent | rect. | 9 | 6 |
| 960 | 20.92 | temperature | 10 | 720 | > th | dose dependent | rect. | 18 | 17 |
| 961 | 20.92 | wind | 7 | 43200 | > th | dose dependent | rect. | 19 | 20 |
| 977 | 20.94 | radiation | 1 | 14400 | < th | dose dependent | rect. | 18 | 1 |
| 989 | 20.94 | temperature | 20 | 270 | > th | dose dependent | rect. | 3 | 18 |