Os01g0166200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os01g0166200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 234.37 | 0.719 | 2.96 | 0.253 | 0.0519 | 6.97 | 0.535 | 7.48 | -0.0454 | 1.33 | 30.54 | 95 | 6.99 | 1.07 |
| 238.39 | 0.719 | 2.96 | 0.253 | 0.0457 | 4.52 | 0.503 | -- | -0.0528 | 0.847 | 30.53 | 84 | 7.16 | 0.951 |
| 229.77 | 0.706 | 2.96 | 0.23 | 0.056 | 8.26 | -- | 9.17 | -0.0576 | 2.78 | 30.52 | 88 | 6.94 | 1.03 |
| 238.05 | 0.719 | 2.96 | 0.233 | 0.0391 | 4.76 | -- | -- | -0.0529 | 23.1 | 30.23 | 114 | 7 | 0.983 |
| 229.39 | 0.705 | 2.97 | 0.241 | -- | 8.93 | -- | 11.7 | -0.0509 | -- | 30.23 | 91 | 6.97 | 1 |
| 265.62 | 0.764 | 2.97 | 0.186 | 0.0453 | -- | 0.538 | -- | -0.0813 | 1.77 | -- | -- | -- | -- |
| 266.48 | 0.764 | 2.97 | 0.168 | 0.0878 | -- | -- | -- | -0.0855 | 5.41 | -- | -- | -- | -- |
| 238.15 | 0.719 | 2.96 | 0.235 | -- | 4.73 | -- | -- | -0.0515 | -- | 30.27 | 113 | 7 | 0.985 |
| 239.49 | 0.721 | 2.97 | -- | 0.0441 | 4.69 | -- | -- | -0.0803 | 23.2 | 30.53 | 102 | 7.02 | 0.997 |
| 266.88 | 0.763 | 2.97 | 0.171 | -- | -- | -- | -- | -0.0833 | -- | -- | -- | -- | -- |
| 267.23 | 0.765 | 2.97 | -- | 0.0907 | -- | -- | -- | -0.104 | 5.34 | -- | -- | -- | -- |
| 239.6 | 0.721 | 2.97 | -- | -- | 4.67 | -- | -- | -0.0778 | -- | 30.4 | 111 | 7.01 | 0.988 |
| 267.65 | 0.764 | 2.97 | -- | -- | -- | -- | -- | -0.102 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 236.09 | radiation | 30 | 90 | > th | dose independent | rect. | 7 | 1 |
| 17 | 238.10 | atmosphere | 1005 | 10 | < th | dose dependent | rect. | 6 | 3 |
| 19 | 238.14 | atmosphere | 1005 | 90 | < th | dose dependent | rect. | 6 | 1 |
| 20 | 238.17 | atmosphere | 1005 | 10 | < th | dose dependent | rect. | 8 | 1 |
| 30 | 239.44 | radiation | 30 | 90 | > th | dose dependent | rect. | 7 | 1 |
| 46 | 240.55 | atmosphere | 1000 | 10 | < th | dose independent | rect. | 6 | 2 |
| 51 | 240.72 | atmosphere | 1000 | 90 | < th | dose independent | rect. | 6 | 1 |
| 72 | 241.43 | wind | 1 | 10 | < th | dose dependent | rect. | 1 | 2 |
| 73 | 242.09 | wind | 1 | 90 | < th | dose dependent | rect. | 13 | 1 |
| 76 | 243.00 | temperature | 30 | 10 | > th | dose independent | rect. | 14 | 1 |
| 84 | 244.34 | radiation | 20 | 10 | > th | dose independent | rect. | 7 | 2 |
| 135 | 245.32 | wind | 1 | 90 | < th | dose independent | rect. | 13 | 1 |
| 137 | 245.40 | wind | 1 | 10 | < th | dose independent | rect. | 1 | 1 |
| 138 | 245.46 | radiation | 20 | 10 | > th | dose dependent | rect. | 7 | 1 |
| 304 | 247.51 | humidity | 70 | 10 | < th | dose independent | rect. | 7 | 1 |
| 364 | 247.51 | humidity | 70 | 10 | < th | dose dependent | rect. | 7 | 1 |
| 494 | 248.62 | humidity | 90 | 10 | < th | dose dependent | rect. | 7 | 1 |
| 496 | 248.90 | temperature | 30 | 10 | > th | dose independent | rect. | 13 | 6 |
| 532 | 249.63 | temperature | 25 | 30 | > th | dose independent | rect. | 7 | 1 |
| 568 | 250.00 | atmosphere | 1005 | 270 | < th | dose dependent | rect. | 4 | 1 |
| 570 | 250.03 | humidity | 90 | 30 | < th | dose independent | rect. | 7 | 1 |
| 579 | 250.33 | atmosphere | 1000 | 270 | < th | dose independent | rect. | 4 | 1 |
| 626 | 250.94 | temperature | 25 | 10 | > th | dose dependent | rect. | 13 | 1 |
| 710 | 251.79 | humidity | 70 | 30 | < th | dose dependent | rect. | 18 | 14 |
| 770 | 252.09 | humidity | 70 | 30 | < th | dose independent | rect. | 18 | 15 |
| 860 | 253.11 | temperature | 25 | 10 | < th | dose dependent | rect. | 1 | 3 |
| 871 | 253.40 | temperature | 20 | 10 | < th | dose independent | rect. | 2 | 1 |
| 919 | 253.99 | temperature | 30 | 10 | < th | dose independent | rect. | 8 | 23 |
| 926 | 254.05 | temperature | 25 | 90 | < th | dose dependent | rect. | 1 | 2 |
| 968 | 254.48 | temperature | 25 | 10 | > th | dose dependent | rect. | 7 | 1 |
| 990 | 254.54 | humidity | 90 | 10 | > th | dose dependent | rect. | 24 | 3 |
| 997 | 254.58 | temperature | 25 | 270 | > th | dose dependent | rect. | 4 | 1 |