Os01g0164400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : RNA-binding region RNP-1 (RNA recognition motif) domain containing protein.
FiT-DB / Search/ Help/ Sample detail
|
Os01g0164400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : RNA-binding region RNP-1 (RNA recognition motif) domain containing protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = precipitation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 28.77 | 0.252 | 12.2 | 1.15 | 0.726 | -0.46 | -0.236 | -0.301 | 0.0531 | 14.6 | -0.1236 | 12561 | -- | -- |
| 28.86 | 0.25 | 12.2 | 1.13 | 0.72 | -0.485 | -0.292 | -- | 0.0446 | 14.5 | 0.1254 | 12541 | -- | -- |
| 28.95 | 0.251 | 12.2 | 1.14 | 0.725 | -0.458 | -- | -0.291 | 0.0516 | 14.6 | -0.09872 | 12541 | -- | -- |
| 28.99 | 0.251 | 12.2 | 1.15 | 0.73 | -0.496 | -- | -- | 0.0464 | 14.6 | 0.1967 | 12541 | -- | -- |
| 59.64 | 0.36 | 12.2 | 1.13 | -- | -0.436 | -- | -0.32 | 0.043 | -- | 0.123 | 12300 | -- | -- |
| 35.62 | 0.28 | 12.2 | 1.08 | 0.721 | -- | -0.189 | -- | 0.143 | 14.6 | -- | -- | -- | -- |
| 35.75 | 0.28 | 12.2 | 1.08 | 0.721 | -- | -- | -- | 0.142 | 14.6 | -- | -- | -- | -- |
| 59.76 | 0.36 | 12.2 | 1.13 | -- | -0.459 | -- | -- | 0.0422 | -- | 0.2105 | 12300 | -- | -- |
| 61.69 | 0.366 | 12.2 | -- | 0.716 | -0.386 | -- | -- | -0.0568 | 14.5 | -0.08655 | 13135 | -- | -- |
| 66.15 | 0.38 | 12.2 | 1.05 | -- | -- | -- | -- | 0.124 | -- | -- | -- | -- | -- |
| 66.43 | 0.381 | 12.2 | -- | 0.7 | -- | -- | -- | 0.0219 | 14.6 | -- | -- | -- | -- |
| 90.77 | 0.444 | 12.2 | -- | -- | -0.389 | -- | -- | -0.0816 | -- | -0.003889 | 13428 | -- | -- |
| 95.14 | 0.455 | 12.2 | -- | -- | -- | -- | -- | 0.00763 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 28.58 | temperature | 20.0 | 14400 | < th | dose independent | rect. | 20 | 1 |
| 6 | 28.86 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 4 | 15 |
| 8 | 28.87 | temperature | 20.0 | 14400 | > th | dose independent | rect. | 18 | 3 |
| 10 | 28.87 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 4 | 15 |
| 11 | 28.87 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 4 | 15 |
| 14 | 28.89 | temperature | 20.0 | 14400 | > th | dose independent | rect. | 20 | 1 |
| 27 | 28.99 | precipitation | 0.1 | 4320 | > th | dose independent | sin | 2 | NA |
| 36 | 29.01 | precipitation | 0.1 | 14400 | > th | dose independent | sin | 0 | NA |
| 37 | 29.01 | precipitation | 0.1 | 4320 | < th | dose independent | sin | 2 | NA |
| 41 | 29.01 | precipitation | 0.1 | 4320 | < th | dose dependent | sin | 2 | NA |
| 43 | 29.02 | precipitation | 0.1 | 14400 | < th | dose independent | sin | 0 | NA |
| 46 | 29.02 | precipitation | 0.1 | 14400 | < th | dose dependent | sin | 0 | NA |
| 48 | 29.03 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 24 | 19 |
| 49 | 29.04 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 10 | 9 |
| 63 | 29.05 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 24 | 19 |
| 68 | 29.05 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 24 | 19 |
| 79 | 29.07 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 10 | 1 |
| 91 | 29.08 | precipitation | 0.1 | 14400 | > th | dose dependent | sin | 1 | NA |
| 119 | 29.13 | wind | 9.0 | 14400 | < th | dose dependent | rect. | 3 | 2 |
| 123 | 29.14 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 10 | 1 |
| 131 | 29.14 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 3 | 2 |
| 135 | 29.15 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 13 | 1 |
| 156 | 29.17 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 14 | 6 |
| 164 | 29.17 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 14 | 6 |
| 168 | 29.18 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 5 | 1 |
| 183 | 29.20 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 12 | 1 |
| 185 | 29.20 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 16 | 4 |
| 191 | 29.20 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 16 | 4 |
| 203 | 29.21 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 5 | 1 |
| 228 | 29.24 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 24 | 19 |
| 239 | 29.25 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 3 | 16 |
| 251 | 29.27 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 10 | 4 |
| 258 | 29.27 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 5 | 15 |
| 269 | 29.28 | temperature | 25.0 | 14400 | < th | dose dependent | rect. | 16 | 1 |
| 273 | 29.29 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 10 | 4 |
| 290 | 29.30 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 8 | 12 |
| 303 | 29.32 | wind | 3.0 | 14400 | < th | dose independent | rect. | 24 | 1 |
| 305 | 29.32 | wind | 5.0 | 14400 | < th | dose independent | rect. | 4 | 5 |
| 316 | 29.33 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 5 | 1 |
| 324 | 29.33 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 5 | 1 |
| 326 | 29.33 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 24 | 5 |
| 327 | 29.33 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 10 | 10 |
| 330 | 29.33 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 3 | 23 |
| 345 | 29.35 | wind | 9.0 | 14400 | < th | dose dependent | rect. | 24 | 5 |
| 353 | 29.36 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 5 | 12 |
| 362 | 29.37 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 16 | 1 |
| 371 | 29.37 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 21 | 23 |
| 372 | 29.38 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 16 | 1 |
| 377 | 29.38 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 4 | 22 |
| 381 | 29.38 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 4 | 22 |
| 389 | 29.39 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 4 | 22 |
| 401 | 29.40 | wind | 3.0 | 14400 | > th | dose independent | rect. | 24 | 1 |
| 441 | 29.42 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 16 | 1 |
| 444 | 29.42 | wind | 5.0 | 14400 | > th | dose independent | rect. | 5 | 4 |
| 453 | 29.42 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 16 | 1 |
| 455 | 29.42 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 14 | 3 |
| 480 | 29.44 | precipitation | 0.1 | 14400 | > th | dose dependent | no | NA | NA |
| 489 | 29.44 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 10 | 20 |
| 509 | 29.45 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 9 | 13 |
| 555 | 29.46 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 13 | 23 |
| 653 | 29.50 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 13 | 15 |
| 672 | 29.51 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 8 | 9 |
| 688 | 29.52 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 7 | 19 |
| 702 | 29.53 | wind | 5.0 | 14400 | < th | dose independent | rect. | 7 | 1 |
| 712 | 29.53 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 15 | 11 |
| 723 | 29.53 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 15 | 11 |
| 738 | 29.54 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 15 | 11 |
| 741 | 29.54 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 10 | 16 |
| 753 | 29.54 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 10 | 16 |
| 762 | 29.54 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 19 | 23 |
| 771 | 29.55 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 10 | 16 |
| 778 | 29.55 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 12 | 10 |
| 780 | 29.55 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 15 | 13 |
| 793 | 29.56 | wind | 5.0 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 807 | 29.56 | temperature | 25.0 | 14400 | < th | dose dependent | rect. | 9 | 1 |
| 808 | 29.56 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 9 | 2 |
| 879 | 29.59 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 17 | 22 |
| 887 | 29.59 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 15 | 7 |
| 888 | 29.59 | temperature | 25.0 | 14400 | < th | dose dependent | rect. | 9 | 9 |
| 909 | 29.61 | wind | 5.0 | 14400 | > th | dose independent | rect. | 3 | 7 |
| 911 | 29.61 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 8 | 7 |
| 931 | 29.61 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 10 | 7 |
| 984 | 29.63 | wind | 3.0 | 14400 | > th | dose dependent | rect. | 3 | 6 |
| 993 | 29.64 | humidity | 60.0 | 14400 | > th | dose independent | sin | 1 | NA |
| 997 | 29.64 | wind | 1.0 | 14400 | < th | dose independent | rect. | 1 | 6 |