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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0162800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Leucine rich repeat, N-terminal domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.43 (0.0387) R2 : 0.893
β1 : -- (--) R2dD : -- R2D : --
β2 : 6.37 (0.109) R2dC : 1.15 R2C : 0.709
β3 : -3.66 (0.178) R2dE : 0.146 R2E : -0.267
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.671 (0.0822) R2dN8 : 0.0218 R2N8 : 0.0293
σ : 0.719
deviance : 238.4
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_____
C
peak time of C : 10.8
E
wheather : temperature
threshold : -8.854
memory length : 779
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 15.4
open length of G : 20.4

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
237.43 0.724 6.4 0.173 5.83 -3.03 -1.14 2.3 -0.559 11.2 6 747 16 20.3
241.51 0.724 6.45 -0.174 5.71 -3 -0.841 -- -0.621 11.3 4.819 736 15.9 20.7
241.22 0.723 6.43 -0.164 5.92 -3.17 -- 0.999 -0.649 11.1 4.629 757 15.9 19.9
237.06 0.717 6.45 -0.397 6.34 -3.57 -- -- -0.768 10.8 -7.849 777 15.4 20.1
503.92 1.05 6.66 -0.754 -- -3.94 -- 1.03 -1.03 -- -140 2983 16.5 13.3
356.36 0.885 6.57 -0.968 5.26 -- -0.782 -- -1.1 11.7 -- -- -- --
359.01 0.887 6.57 -1 5.26 -- -- -- -1.11 11.7 -- -- -- --
276.74 0.775 6.68 -0.771 -- -4.85 -- -- -1.11 -- -94.51 242 15.3 13
238.4 0.719 6.43 -- 6.37 -3.66 -- -- -0.671 10.8 -8.854 779 15.4 20.4
2100.97 2.14 6.69 -1.15 -- -- -- -- -1.17 -- -- -- -- --
385.36 0.918 6.55 -- 5.27 -- -- -- -0.994 11.7 -- -- -- --
286.19 0.788 6.68 -- -- -5.22 -- -- -0.995 -- -25.08 237 15.4 13
2135.91 2.16 6.66 -- -- -- -- -- -1.04 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 240.98 temperature 10 720 > th dose dependent rect. 16 20
10 246.98 temperature 10 720 > th dose dependent rect. 16 12
13 247.57 temperature 10 720 > th dose dependent rect. 8 20
42 252.62 temperature 10 720 > th dose dependent rect. 24 20
88 257.89 temperature 30 720 < th dose dependent rect. 13 19
124 259.36 temperature 10 1440 > th dose dependent rect. 17 2
134 259.78 temperature 30 720 < th dose dependent rect. 4 21
164 260.64 temperature 10 1440 > th dose dependent rect. 16 6
188 261.12 temperature 25 1440 < th dose dependent rect. 16 7
200 261.35 temperature 25 1440 < th dose dependent rect. 15 10
202 261.38 temperature 25 1440 < th dose dependent rect. 14 12
209 261.54 temperature 25 1440 < th dose dependent sin 16 NA
261 262.15 temperature 30 1440 < th dose dependent rect. 17 3
279 262.29 temperature 30 1440 < th dose dependent rect. 18 1
362 263.02 temperature 10 720 > th dose dependent no NA NA
393 263.22 temperature 10 1440 > th dose dependent sin 15 NA
411 263.32 temperature 30 720 < th dose dependent rect. 18 22
632 264.28 temperature 30 720 < th dose dependent no NA NA
728 264.55 temperature 25 1440 < th dose dependent rect. 21 23