Os01g0162500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Leucine-rich repeat, typical subtype containing protein.
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Os01g0162500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Leucine-rich repeat, typical subtype containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 148.31 | 0.572 | 3.59 | 1.71 | 0.591 | -0.901 | 1.37 | -2.85 | 0.789 | 16 | 19.4 | 5795 | -- | -- |
| 156.7 | 0.587 | 3.69 | 1.58 | 0.592 | 0.075 | 1.33 | -- | 0.781 | 16 | 19.4 | 5795 | -- | -- |
| 153.28 | 0.577 | 3.59 | 1.71 | 0.584 | -0.945 | -- | -2.94 | 0.791 | 15.8 | 19.2 | 6022 | -- | -- |
| 160.51 | 0.59 | 3.68 | 1.79 | 0.592 | 0.329 | -- | -- | 0.828 | 15.7 | 13.4 | 18648 | -- | -- |
| 172.58 | 0.612 | 3.58 | 1.67 | -- | -0.954 | -- | -2.96 | 0.78 | -- | 19.17 | 6102 | -- | -- |
| 156.87 | 0.587 | 3.7 | 1.56 | 0.58 | -- | 1.34 | -- | 0.77 | 16 | -- | -- | -- | -- |
| 162.03 | 0.596 | 3.69 | 1.58 | 0.587 | -- | -- | -- | 0.777 | 15.9 | -- | -- | -- | -- |
| 179.35 | 0.624 | 3.68 | 1.77 | -- | 0.33 | -- | -- | 0.821 | -- | 13.5 | 18455 | -- | -- |
| 173.5 | 0.613 | 3.8 | -- | 0.58 | -1.07 | -- | -- | 0.262 | 15.2 | 21 | 47520 | -- | -- |
| 180.94 | 0.629 | 3.69 | 1.55 | -- | -- | -- | -- | 0.762 | -- | -- | -- | -- | -- |
| 227.7 | 0.706 | 3.73 | -- | 0.556 | -- | -- | -- | 0.601 | 15.9 | -- | -- | -- | -- |
| 192.94 | 0.647 | 3.81 | -- | -- | -1.07 | -- | -- | 0.239 | -- | 21.04 | 47520 | -- | -- |
| 244.67 | 0.73 | 3.73 | -- | -- | -- | -- | -- | 0.589 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 147.09 | humidity | 70 | 10 | > th | dose independent | rect. | 13 | 10 |
| 4 | 147.45 | temperature | 30 | 30 | < th | dose independent | rect. | 15 | 8 |
| 7 | 147.96 | temperature | 30 | 90 | < th | dose independent | rect. | 13 | 9 |
| 8 | 148.15 | temperature | 30 | 270 | < th | dose independent | rect. | 13 | 7 |
| 9 | 148.20 | radiation | 20 | 10 | > th | dose independent | rect. | 12 | 23 |
| 12 | 148.33 | radiation | 20 | 30 | < th | dose independent | rect. | 12 | 11 |
| 17 | 148.50 | humidity | 50 | 30 | > th | dose dependent | rect. | 15 | 8 |
| 18 | 148.51 | temperature | 20 | 4320 | < th | dose independent | rect. | 20 | 11 |
| 19 | 148.54 | temperature | 20 | 4320 | < th | dose independent | rect. | 5 | 2 |
| 21 | 148.56 | temperature | 20 | 4320 | > th | dose independent | rect. | 20 | 11 |
| 35 | 148.64 | temperature | 20 | 4320 | > th | dose independent | rect. | 5 | 2 |
| 52 | 148.71 | temperature | 20 | 30 | > th | dose dependent | rect. | 16 | 17 |
| 62 | 148.74 | temperature | 20 | 4320 | < th | dose dependent | rect. | 24 | 2 |
| 76 | 148.79 | temperature | 20 | 4320 | < th | dose independent | sin | 10 | NA |
| 78 | 148.79 | temperature | 20 | 4320 | < th | dose independent | rect. | 24 | 7 |
| 95 | 148.82 | temperature | 20 | 4320 | > th | dose independent | sin | 10 | NA |
| 120 | 148.86 | temperature | 20 | 4320 | > th | dose independent | rect. | 24 | 7 |
| 136 | 148.88 | temperature | 20 | 4320 | < th | dose dependent | rect. | 24 | 5 |
| 141 | 148.89 | temperature | 20 | 4320 | < th | dose dependent | rect. | 4 | 1 |
| 161 | 148.92 | radiation | 40 | 90 | > th | dose independent | rect. | 12 | 23 |
| 214 | 149.00 | temperature | 20 | 4320 | < th | dose independent | rect. | 22 | 1 |
| 270 | 149.07 | temperature | 20 | 4320 | < th | dose dependent | rect. | 21 | 9 |
| 274 | 149.08 | humidity | 70 | 10 | < th | dose independent | rect. | 12 | 23 |
| 297 | 149.12 | wind | 3 | 720 | > th | dose independent | rect. | 14 | 1 |
| 342 | 149.17 | wind | 3 | 720 | > th | dose dependent | rect. | 14 | 2 |
| 352 | 149.18 | temperature | 25 | 270 | > th | dose dependent | rect. | 9 | 2 |
| 376 | 149.21 | humidity | 70 | 10 | > th | dose independent | rect. | 24 | 23 |
| 391 | 149.23 | temperature | 20 | 4320 | > th | dose independent | rect. | 22 | 1 |
| 482 | 149.34 | temperature | 20 | 4320 | > th | dose independent | rect. | 1 | 1 |
| 494 | 149.34 | temperature | 20 | 4320 | < th | dose dependent | sin | 9 | NA |
| 497 | 149.34 | radiation | 20 | 270 | < th | dose dependent | rect. | 11 | 8 |
| 516 | 149.37 | wind | 3 | 4320 | > th | dose independent | rect. | 20 | 1 |
| 632 | 149.46 | temperature | 20 | 4320 | < th | dose independent | no | NA | NA |
| 641 | 149.46 | atmosphere | 1005 | 30 | > th | dose dependent | rect. | 15 | 8 |
| 660 | 149.49 | temperature | 20 | 4320 | > th | dose independent | no | NA | NA |
| 666 | 149.49 | temperature | 20 | 4320 | < th | dose independent | rect. | 24 | 23 |
| 673 | 149.50 | temperature | 20 | 4320 | > th | dose independent | rect. | 24 | 23 |
| 700 | 149.53 | temperature | 20 | 4320 | > th | dose independent | rect. | 3 | 23 |
| 706 | 149.54 | temperature | 20 | 4320 | < th | dose independent | rect. | 3 | 23 |
| 729 | 149.57 | radiation | 10 | 270 | < th | dose independent | rect. | 10 | 9 |
| 766 | 149.61 | wind | 3 | 4320 | < th | dose independent | rect. | 20 | 1 |
| 767 | 149.61 | temperature | 30 | 90 | > th | dose independent | rect. | 12 | 2 |
| 791 | 149.62 | temperature | 20 | 4320 | < th | dose dependent | rect. | 24 | 22 |
| 807 | 149.64 | temperature | 30 | 30 | < th | dose dependent | rect. | 13 | 10 |
| 842 | 149.67 | humidity | 50 | 270 | > th | dose dependent | rect. | 13 | 6 |
| 881 | 149.70 | radiation | 30 | 30 | < th | dose dependent | rect. | 13 | 10 |
| 963 | 149.79 | temperature | 20 | 4320 | < th | dose dependent | no | NA | NA |
| 979 | 149.81 | wind | 5 | 10 | < th | dose independent | rect. | 23 | 14 |
| 986 | 149.81 | atmosphere | 995 | 30 | > th | dose dependent | rect. | 23 | 16 |
| 991 | 149.82 | wind | 3 | 4320 | > th | dose dependent | rect. | 19 | 7 |
| 992 | 149.82 | temperature | 30 | 30 | < th | dose dependent | rect. | 15 | 8 |