Os01g0162400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os01g0162400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 293.75 | 0.805 | 3.21 | 0.0658 | 0.249 | -0.718 | -0.134 | 1.98 | 0.0781 | 10.1 | 0.8206 | 1443 | -- | -- |
| 295.2 | 0.8 | 3.21 | -0.115 | 0.266 | -1.06 | 0.0608 | -- | 0.0781 | 9.75 | 0.5399 | 1448 | -- | -- |
| 293.6 | 0.798 | 3.21 | 0.0648 | 0.25 | -0.762 | -- | 1.93 | 0.0731 | 9.94 | 0.6601 | 1443 | -- | -- |
| 294.9 | 0.8 | 3.22 | -0.142 | 0.231 | -1.08 | -- | -- | 0.0631 | 9.87 | 0.44 | 1438 | -- | -- |
| 293.85 | 0.798 | 3.21 | 0.0293 | -- | -0.831 | -- | 2.02 | 0.0643 | -- | 0.6692 | 1350 | -- | -- |
| 308.31 | 0.823 | 3.27 | -0.388 | 0.224 | -- | -0.0187 | -- | -0.0976 | 9.9 | -- | -- | -- | -- |
| 308.31 | 0.822 | 3.27 | -0.389 | 0.224 | -- | -- | -- | -0.0976 | 9.91 | -- | -- | -- | -- |
| 293.95 | 0.799 | 3.24 | -0.0352 | -- | -1.32 | -- | -- | 0.0497 | -- | 0.1801 | 1377 | -- | -- |
| 294.81 | 0.8 | 3.23 | -- | 0.155 | -1.18 | -- | -- | 0.0689 | 9.05 | 0.46 | 1410 | -- | -- |
| 311.33 | 0.824 | 3.27 | -0.391 | -- | -- | -- | -- | -0.0976 | -- | -- | -- | -- | -- |
| 312.29 | 0.827 | 3.26 | -- | 0.226 | -- | -- | -- | -0.0543 | 10 | -- | -- | -- | -- |
| 293.95 | 0.799 | 3.24 | -- | -- | -1.26 | -- | -- | 0.054 | -- | 0.181 | 1368 | -- | -- |
| 315.37 | 0.829 | 3.26 | -- | -- | -- | -- | -- | -0.0542 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 291.45 | humidity | 90.0 | 270 | > th | dose independent | rect. | 6 | 10 |
| 4 | 292.05 | humidity | 90.0 | 270 | > th | dose dependent | rect. | 6 | 10 |
| 5 | 292.16 | humidity | 90.0 | 270 | > th | dose independent | rect. | 6 | 5 |
| 11 | 292.52 | humidity | 90.0 | 270 | > th | dose dependent | rect. | 6 | 5 |
| 21 | 293.03 | humidity | 90.0 | 270 | > th | dose independent | rect. | 7 | 2 |
| 22 | 293.05 | temperature | 25.0 | 1440 | < th | dose independent | rect. | 14 | 7 |
| 23 | 293.17 | temperature | 25.0 | 1440 | > th | dose independent | rect. | 14 | 6 |
| 24 | 293.18 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 17 | 23 |
| 28 | 293.23 | humidity | 90.0 | 270 | > th | dose dependent | rect. | 6 | 15 |
| 29 | 293.27 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 17 | 23 |
| 31 | 293.32 | temperature | 25.0 | 270 | < th | dose dependent | rect. | 17 | 19 |
| 36 | 293.43 | temperature | 25.0 | 1440 | > th | dose independent | rect. | 15 | 4 |
| 42 | 293.46 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 17 | 23 |
| 46 | 293.50 | humidity | 90.0 | 270 | < th | dose independent | rect. | 5 | 13 |
| 47 | 293.50 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 4 | 14 |
| 60 | 293.57 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 23 | 19 |
| 68 | 293.60 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 4 | 14 |
| 83 | 293.69 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 14 | 23 |
| 85 | 293.70 | humidity | 90.0 | 270 | < th | dose independent | rect. | 3 | 15 |
| 88 | 293.75 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 14 | 20 |
| 95 | 293.78 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 8 | 23 |
| 98 | 293.81 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 8 | 23 |
| 99 | 293.81 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 14 | 23 |
| 100 | 293.82 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 11 | 23 |
| 111 | 293.88 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 8 | 23 |
| 112 | 293.89 | radiation | 1.0 | 1440 | > th | dose independent | no | NA | NA |
| 159 | 293.89 | atmosphere | 1005.0 | 270 | < th | dose dependent | rect. | 7 | 1 |
| 161 | 293.91 | humidity | 90.0 | 90 | < th | dose independent | rect. | 3 | 18 |
| 163 | 293.92 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 14 | 20 |
| 187 | 293.98 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 4 | 22 |
| 194 | 293.99 | radiation | 1.0 | 1440 | < th | dose independent | no | NA | NA |
| 203 | 294.00 | radiation | 1.0 | 1440 | > th | dose independent | sin | 2 | NA |
| 213 | 294.00 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 1 | 23 |
| 266 | 294.04 | precipitation | 0.1 | 720 | > th | dose independent | rect. | 2 | 1 |
| 267 | 294.04 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 5 | 11 |
| 274 | 294.04 | precipitation | 0.1 | 720 | > th | dose dependent | rect. | 2 | 1 |
| 275 | 294.04 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 5 | 11 |
| 280 | 294.05 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 5 | 13 |
| 284 | 294.06 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 5 | 21 |
| 285 | 294.07 | radiation | 1.0 | 1440 | < th | dose independent | sin | 2 | NA |
| 301 | 294.12 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 14 | 17 |
| 303 | 294.12 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 14 | 23 |
| 312 | 294.18 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 23 | 19 |
| 327 | 294.21 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 11 | 23 |
| 342 | 294.23 | radiation | 1.0 | 1440 | < th | dose dependent | no | NA | NA |
| 354 | 294.24 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 14 | 17 |
| 429 | 294.36 | radiation | 1.0 | 1440 | < th | dose dependent | sin | 2 | NA |
| 469 | 294.43 | atmosphere | 1005.0 | 90 | < th | dose dependent | rect. | 6 | 5 |
| 533 | 294.55 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 14 | 17 |
| 564 | 294.68 | temperature | 25.0 | 90 | < th | dose dependent | rect. | 22 | 22 |
| 603 | 294.82 | temperature | 25.0 | 270 | < th | dose dependent | rect. | 4 | 23 |
| 610 | 294.84 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 19 | 18 |
| 612 | 294.85 | radiation | 1.0 | 1440 | > th | dose independent | sin | 13 | NA |
| 641 | 294.91 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 17 | 1 |
| 656 | 294.97 | temperature | 25.0 | 270 | < th | dose dependent | rect. | 1 | 23 |
| 657 | 294.98 | temperature | 25.0 | 270 | < th | dose dependent | no | NA | NA |
| 659 | 294.99 | radiation | 1.0 | 1440 | < th | dose independent | sin | 13 | NA |
| 660 | 294.99 | precipitation | 0.1 | 720 | > th | dose independent | rect. | 23 | 5 |
| 685 | 295.02 | precipitation | 0.1 | 720 | > th | dose dependent | rect. | 23 | 5 |
| 703 | 295.03 | temperature | 25.0 | 270 | < th | dose dependent | rect. | 6 | 23 |
| 738 | 295.13 | humidity | 90.0 | 10 | < th | dose independent | rect. | 6 | 15 |
| 743 | 295.14 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 19 | 1 |
| 753 | 295.17 | radiation | 1.0 | 1440 | < th | dose dependent | sin | 13 | NA |
| 767 | 295.21 | humidity | 80.0 | 10 | > th | dose dependent | rect. | 7 | 5 |
| 769 | 295.22 | humidity | 90.0 | 720 | < th | dose independent | rect. | 3 | 8 |
| 784 | 295.27 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 8 | 18 |
| 794 | 295.30 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 19 | 5 |
| 796 | 295.30 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 8 | 11 |
| 839 | 295.41 | wind | 7.0 | 43200 | > th | dose independent | rect. | 16 | 1 |
| 854 | 295.44 | humidity | 80.0 | 720 | > th | dose dependent | rect. | 2 | 12 |
| 884 | 295.50 | humidity | 90.0 | 720 | < th | dose independent | rect. | 6 | 5 |
| 898 | 295.54 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 18 | 9 |
| 915 | 295.59 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 22 | 1 |
| 946 | 295.65 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 20 | 7 |
| 959 | 295.67 | humidity | 90.0 | 720 | < th | dose independent | rect. | 3 | 10 |
| 989 | 295.73 | humidity | 60.0 | 43200 | > th | dose independent | rect. | 9 | 1 |
| 997 | 295.74 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 14 | 12 |