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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0161900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description :


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.93 (0.0152) R2 : 0.00879
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0644 (0.032) R2dN8 : 0.0114 R2N8 : 0.00879
σ : 0.287
deviance : 37.68
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
35.68 0.281 2.93 -0.0236 0.0232 -0.301 -0.205 0.623 0.0636 16.9 1 16 -- --
36 0.279 2.93 2.44e-05 0.0179 -0.258 -0.133 -- 0.0704 16.9 1.054 16 -- --
35.78 0.279 2.93 -0.0218 0.0249 -0.301 -- 0.558 0.0638 15.1 1.014 16 -- --
36.04 0.28 2.92 0.000177 0.0199 -0.26 -- -- 0.0708 14.4 1.081 16 -- --
35.81 0.279 2.93 -0.0206 -- -0.286 -- 0.544 0.0629 -- 1.051 16 -- --
37.41 0.287 2.92 0.0319 0.0536 -- 0.185 -- 0.0677 5.3 -- -- -- --
37.5 0.287 2.93 0.0321 0.0547 -- -- -- 0.0668 5.07 -- -- -- --
36.07 0.28 2.93 0.00136 -- -0.249 -- -- 0.0691 -- 1.044 16 -- --
36.04 0.28 2.93 -- 0.02 -0.259 -- -- 0.0695 14.3 1.09 16 -- --
37.65 0.287 2.93 0.0341 -- -- -- -- 0.0682 -- -- -- -- --
37.52 0.287 2.93 -- 0.0553 -- -- -- 0.0632 5.05 -- -- -- --
36.07 0.28 2.93 -- -- -0.249 -- -- 0.0689 -- 1.042 16 -- --
37.68 0.287 2.93 -- -- -- -- -- 0.0644 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 24.12 wind 5.0 30 < th dose dependent rect. 2 1
2 24.13 wind 3.0 30 < th dose independent rect. 2 1
3 24.13 humidity 80.0 30 > th dose independent rect. 2 1
10 24.18 temperature 10.0 30 > th dose independent rect. 2 1
12 24.18 temperature 30.0 30 < th dose independent rect. 2 1
13 24.18 humidity 50.0 30 > th dose independent rect. 2 1
16 24.18 atmosphere 995.0 30 > th dose independent rect. 2 1
17 24.18 atmosphere 1010.0 30 < th dose independent rect. 2 1
19 24.18 radiation 1.0 30 < th dose independent rect. 2 1
24 24.18 precipitation 0.1 30 < th dose independent rect. 2 1
25 24.18 temperature 10.0 30 > th dose independent rect. 3 23
26 24.18 temperature 10.0 30 > th dose dependent rect. 2 1
27 24.18 radiation 1.0 30 < th dose dependent rect. 2 1
32 24.18 precipitation 0.1 30 < th dose dependent rect. 2 1
33 24.19 atmosphere 1005.0 30 > th dose independent rect. 2 1
34 24.19 humidity 50.0 30 > th dose dependent rect. 2 1
38 24.20 atmosphere 995.0 30 > th dose dependent rect. 2 1
45 24.37 atmosphere 1015.0 30 < th dose dependent rect. 2 1
47 24.41 temperature 30.0 30 < th dose dependent rect. 2 1
50 24.55 wind 9.0 30 < th dose independent rect. 3 23
52 25.01 wind 1.0 30 > th dose independent rect. 2 1
113 31.27 precipitation 0.1 30 < th dose independent rect. 3 23
114 31.27 precipitation 0.1 30 < th dose dependent rect. 3 23
115 31.31 atmosphere 995.0 30 > th dose independent rect. 3 23
120 31.87 radiation 40.0 90 > th dose independent rect. 15 1
137 31.87 radiation 40.0 90 > th dose dependent rect. 15 1
382 32.77 humidity 60.0 10 < th dose independent rect. 15 1
384 32.77 humidity 50.0 30 > th dose independent rect. 3 23
386 32.79 wind 1.0 90 < th dose dependent rect. 15 1
417 32.98 wind 1.0 30 > th dose dependent rect. 2 1
421 33.10 humidity 60.0 10 < th dose dependent rect. 15 1
442 33.18 wind 9.0 1440 < th dose independent rect. 3 1
443 33.18 temperature 10.0 1440 > th dose independent rect. 3 1
446 33.18 temperature 30.0 1440 < th dose independent rect. 3 1
450 33.18 humidity 50.0 1440 > th dose independent rect. 3 1
459 33.18 atmosphere 995.0 1440 > th dose independent rect. 3 1
460 33.18 radiation 1.0 1440 < th dose independent rect. 3 1
480 33.18 temperature 10.0 1440 > th dose independent rect. 4 23
483 33.18 radiation 1.0 1440 < th dose dependent rect. 3 1
510 33.27 humidity 90.0 90 < th dose independent rect. 1 2
545 33.32 atmosphere 1015.0 30 < th dose independent rect. 3 23
551 33.35 wind 1.0 90 < th dose independent rect. 15 1
616 33.45 wind 3.0 10 < th dose dependent rect. 16 1
661 33.62 wind 3.0 10 < th dose independent rect. 16 1
718 33.73 humidity 60.0 10 < th dose independent sin 13 NA
747 33.74 atmosphere 1015.0 1440 < th dose independent rect. 3 1
768 33.82 radiation 30.0 30 < th dose dependent rect. 3 23
837 33.93 humidity 60.0 10 > th dose independent sin 13 NA
871 33.99 humidity 60.0 10 < th dose dependent sin 12 NA
995 34.16 atmosphere 1005.0 10 < th dose dependent rect. 16 1