Os01g0161300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Leucine rich repeat, N-terminal domain containing protein.
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Os01g0161300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Leucine rich repeat, N-terminal domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 132.97 | 0.542 | 9.1 | 0.617 | 1.4 | 1.53 | 0.498 | -1.17 | 0.261 | 4.21 | 1.878 | 1452 | -- | -- |
| 134.29 | 0.54 | 9.09 | 0.777 | 1.4 | 1.48 | 0.564 | -- | 0.262 | 4.2 | 2.136 | 1455 | -- | -- |
| 132.33 | 0.536 | 9.1 | 0.638 | 1.44 | 1.54 | -- | -1.24 | 0.252 | 4.1 | 2.12 | 1468 | -- | -- |
| 134.96 | 0.541 | 9.09 | 0.799 | 1.4 | 1.49 | -- | -- | 0.262 | 4.26 | 2.134 | 1455 | -- | -- |
| 230.88 | 0.708 | 9.1 | 0.668 | -- | 1.63 | -- | -1.14 | 0.267 | -- | 2.16 | 1404 | -- | -- |
| 172.97 | 0.617 | 9.02 | 1.03 | 1.41 | -- | 0.669 | -- | 0.559 | 4.35 | -- | -- | -- | -- |
| 174.14 | 0.618 | 9.02 | 1.02 | 1.42 | -- | -- | -- | 0.555 | 4.43 | -- | -- | -- | -- |
| 230.93 | 0.708 | 9.09 | 0.842 | -- | 1.57 | -- | -- | 0.309 | -- | 2.138 | 1399 | -- | -- |
| 151.16 | 0.573 | 9.09 | -- | 1.4 | 1.56 | -- | -- | 0.259 | 4.25 | 1.87 | 1450 | -- | -- |
| 281.74 | 0.784 | 9.03 | 1.08 | -- | -- | -- | -- | 0.593 | -- | -- | -- | -- | -- |
| 201.74 | 0.664 | 9.05 | -- | 1.44 | -- | -- | -- | 0.441 | 4.41 | -- | -- | -- | -- |
| 248.14 | 0.734 | 9.1 | -- | -- | 1.85 | -- | -- | 0.225 | -- | 1.88 | 1407 | -- | -- |
| 312.45 | 0.825 | 9.06 | -- | -- | -- | -- | -- | 0.473 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 128.93 | radiation | 1 | 14400 | < th | dose dependent | rect. | 23 | 6 |
| 5 | 130.07 | radiation | 1 | 14400 | < th | dose dependent | rect. | 19 | 10 |
| 7 | 130.27 | humidity | 90 | 14400 | < th | dose independent | rect. | 22 | 4 |
| 8 | 130.39 | humidity | 90 | 14400 | > th | dose independent | rect. | 22 | 5 |
| 10 | 130.61 | humidity | 90 | 14400 | < th | dose independent | rect. | 21 | 6 |
| 12 | 130.78 | humidity | 90 | 14400 | > th | dose independent | rect. | 24 | 1 |
| 53 | 133.25 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 11 |
| 61 | 133.42 | humidity | 90 | 14400 | > th | dose dependent | rect. | 24 | 1 |
| 66 | 133.76 | humidity | 90 | 14400 | > th | dose dependent | rect. | 5 | 2 |
| 71 | 133.95 | humidity | 90 | 14400 | > th | dose dependent | rect. | 22 | 9 |
| 72 | 133.98 | temperature | 20 | 43200 | > th | dose independent | rect. | 7 | 1 |
| 74 | 134.01 | temperature | 20 | 43200 | < th | dose independent | rect. | 7 | 1 |
| 76 | 134.13 | temperature | 20 | 43200 | < th | dose independent | rect. | 5 | 1 |
| 77 | 134.13 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 2 |
| 79 | 134.15 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 9 |
| 82 | 134.17 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 7 |
| 84 | 134.18 | temperature | 20 | 43200 | < th | dose independent | rect. | 5 | 3 |
| 85 | 134.19 | temperature | 20 | 43200 | > th | dose independent | rect. | 5 | 3 |
| 88 | 134.19 | humidity | 90 | 14400 | > th | dose dependent | rect. | 23 | 3 |
| 93 | 134.25 | temperature | 20 | 43200 | > th | dose independent | rect. | 5 | 1 |
| 110 | 134.48 | wind | 9 | 43200 | > th | dose independent | rect. | 15 | 1 |
| 127 | 134.71 | temperature | 20 | 14400 | > th | dose independent | rect. | 3 | 13 |
| 129 | 134.74 | temperature | 20 | 14400 | < th | dose independent | rect. | 3 | 13 |
| 226 | 135.13 | wind | 9 | 43200 | < th | dose independent | rect. | 15 | 1 |
| 298 | 135.29 | temperature | 20 | 43200 | < th | dose independent | sin | 6 | NA |
| 341 | 135.37 | temperature | 20 | 43200 | > th | dose independent | sin | 5 | NA |
| 360 | 135.39 | radiation | 1 | 4320 | > th | dose independent | rect. | 18 | 11 |
| 510 | 135.57 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 552 | 135.60 | temperature | 20 | 43200 | < th | dose independent | rect. | 4 | 20 |
| 557 | 135.61 | temperature | 20 | 43200 | < th | dose independent | rect. | 23 | 1 |
| 565 | 135.61 | temperature | 20 | 43200 | < th | dose independent | rect. | 14 | 19 |
| 611 | 135.65 | temperature | 20 | 43200 | < th | dose independent | rect. | 1 | 23 |
| 634 | 135.67 | temperature | 20 | 43200 | < th | dose independent | rect. | 10 | 23 |
| 668 | 135.70 | temperature | 20 | 43200 | < th | dose independent | no | NA | NA |
| 748 | 135.78 | temperature | 20 | 43200 | < th | dose independent | rect. | 7 | 23 |
| 844 | 135.88 | temperature | 20 | 43200 | > th | dose independent | rect. | 4 | 23 |
| 849 | 135.89 | temperature | 20 | 43200 | > th | dose independent | no | NA | NA |
| 890 | 135.95 | temperature | 25 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 922 | 136.00 | temperature | 20 | 43200 | > th | dose independent | rect. | 7 | 23 |
| 936 | 136.03 | radiation | 1 | 43200 | < th | dose dependent | rect. | 6 | 1 |
| 970 | 136.11 | radiation | 1 | 14400 | < th | dose dependent | rect. | 18 | 2 |
| 971 | 136.12 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 999 | 136.17 | temperature | 25 | 43200 | < th | dose independent | rect. | 11 | 1 |