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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0161000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Leucine rich repeat, N-terminal domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.21 (0.0186) R2 : 0.00404
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0531 (0.0391) R2dN8 : 0.00522 R2N8 : 0.00404
σ : 0.349
deviance : 56.06
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
50.41 0.334 3.22 0.198 0.209 -0.254 -0.204 -1.18 0.0228 6.23 36.23 5878 -- --
52.39 0.337 3.22 0.131 0.213 -0.283 -0.167 -- 0.00404 6.6 38.52 5487 -- --
50.5 0.331 3.22 0.197 0.21 -0.25 -- -1.2 0.0247 6.37 35.99 5903 -- --
52.45 0.337 3.22 0.104 0.208 -0.303 -- -- -0.00747 6.73 23.94 5516 -- --
52.72 0.338 3.23 0.202 -- -0.261 -- -1.16 0.0252 -- 38.92 5755 -- --
53.49 0.343 3.21 0.0845 0.209 -- -0.224 -- 0.0575 6.15 -- -- -- --
53.61 0.343 3.21 0.0824 0.208 -- -- -- 0.0584 6.32 -- -- -- --
54.63 0.344 3.22 0.11 -- -0.299 -- -- -0.00384 -- 29.47 5643 -- --
52.7 0.338 3.22 -- 0.246 -0.289 -- -- -0.0204 6.3 17.73 4831 -- --
55.86 0.349 3.21 0.0879 -- -- -- -- 0.0629 -- -- -- -- --
53.79 0.343 3.21 -- 0.209 -- -- -- 0.0493 6.3 -- -- -- --
54.95 0.345 3.23 -- -- -0.284 -- -- -0.0124 -- 33.47 5636 -- --
56.06 0.349 3.21 -- -- -- -- -- 0.0531 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 43.92 wind 1.0 30 < th dose independent rect. 2 1
2 44.06 wind 3.0 30 < th dose dependent rect. 2 1
5 44.10 atmosphere 1015.0 30 < th dose dependent rect. 2 1
9 44.15 atmosphere 1005.0 30 > th dose dependent rect. 2 1
10 44.16 temperature 25.0 30 < th dose independent rect. 2 1
11 44.17 temperature 10.0 30 > th dose dependent rect. 2 1
16 44.18 temperature 10.0 30 > th dose independent rect. 2 1
19 44.18 humidity 50.0 30 > th dose independent rect. 2 1
22 44.18 atmosphere 995.0 30 > th dose independent rect. 2 1
23 44.18 atmosphere 1010.0 30 < th dose independent rect. 2 1
25 44.18 radiation 1.0 30 < th dose independent rect. 2 1
30 44.18 precipitation 0.1 30 < th dose independent rect. 2 1
31 44.18 temperature 10.0 30 > th dose independent rect. 3 23
32 44.18 radiation 1.0 30 < th dose dependent rect. 2 1
37 44.18 precipitation 0.1 30 < th dose dependent rect. 2 1
39 44.19 humidity 50.0 30 > th dose dependent rect. 2 1
49 44.34 temperature 30.0 30 < th dose dependent rect. 2 1
50 44.37 atmosphere 1005.0 30 > th dose independent rect. 2 1
53 44.45 wind 9.0 30 < th dose independent rect. 3 23
96 44.99 wind 1.0 30 > th dose independent rect. 2 1
107 46.84 atmosphere 995.0 30 > th dose independent rect. 3 23
118 48.54 precipitation 0.1 30 < th dose independent rect. 3 23
119 48.54 precipitation 0.1 30 < th dose dependent rect. 3 23
137 49.43 wind 9.0 4320 < th dose independent rect. 3 1
138 49.46 atmosphere 995.0 720 > th dose independent rect. 23 16
152 49.75 humidity 90.0 90 < th dose independent rect. 2 1
158 49.83 temperature 25.0 90 > th dose dependent rect. 1 3
162 49.86 humidity 50.0 30 > th dose independent rect. 3 23
166 49.92 radiation 1.0 43200 < th dose dependent rect. 3 1
168 49.94 temperature 10.0 1440 > th dose independent rect. 3 1
171 49.94 temperature 30.0 1440 < th dose independent rect. 3 1
175 49.94 humidity 50.0 1440 > th dose independent rect. 3 1
184 49.94 atmosphere 995.0 1440 > th dose independent rect. 3 1
185 49.94 radiation 1.0 1440 < th dose independent rect. 3 1
205 49.94 temperature 10.0 1440 > th dose independent rect. 4 23
209 49.94 radiation 1.0 1440 < th dose dependent rect. 3 1
228 50.00 humidity 90.0 720 < th dose independent rect. 1 1
229 50.00 temperature 10.0 720 > th dose independent rect. 15 8
230 50.00 temperature 10.0 720 > th dose independent rect. 23 16
236 50.09 humidity 80.0 14400 < th dose dependent rect. 3 6
237 50.10 radiation 10.0 30 > th dose independent rect. 7 1
248 50.19 temperature 10.0 720 > th dose independent rect. 3 8
249 50.19 atmosphere 995.0 720 > th dose independent rect. 3 8
250 50.19 precipitation 0.1 720 < th dose independent rect. 15 8
251 50.19 temperature 10.0 720 > th dose independent rect. 11 16
252 50.19 precipitation 0.1 720 < th dose dependent rect. 15 8
280 50.23 humidity 80.0 14400 < th dose dependent rect. 21 13
285 50.28 humidity 90.0 90 < th dose independent rect. 2 3
289 50.30 humidity 80.0 10 < th dose independent rect. 6 2
292 50.31 humidity 90.0 90 < th dose independent rect. 1 7
295 50.34 humidity 70.0 14400 > th dose independent rect. 8 2
312 50.38 humidity 70.0 14400 < th dose independent rect. 8 2
313 50.39 wind 9.0 720 < th dose independent rect. 3 8
316 50.39 wind 9.0 30 < th dose dependent rect. 3 23
339 50.45 precipitation 0.1 720 < th dose independent rect. 11 16
340 50.45 wind 1.0 30 > th dose dependent rect. 2 1
343 50.45 precipitation 0.1 720 < th dose dependent rect. 11 16
361 50.49 humidity 70.0 4320 > th dose dependent rect. 3 9
362 50.49 atmosphere 995.0 30 > th dose dependent rect. 3 23
367 50.51 radiation 40.0 720 < th dose independent rect. 15 8
383 50.55 humidity 80.0 10 < th dose independent rect. 23 9
390 50.57 humidity 70.0 4320 > th dose dependent rect. 5 4
404 50.60 radiation 10.0 10 > th dose independent rect. 16 16
420 50.64 humidity 50.0 720 > th dose independent rect. 3 8
424 50.65 atmosphere 1015.0 30 < th dose independent rect. 3 23
432 50.67 humidity 80.0 4320 < th dose independent rect. 5 8
445 50.69 humidity 90.0 1440 > th dose independent rect. 2 1
446 50.69 humidity 80.0 4320 > th dose independent rect. 5 8
486 50.72 humidity 50.0 30 > th dose dependent rect. 3 23
491 50.73 humidity 90.0 720 < th dose independent rect. 24 8
506 50.74 wind 9.0 720 < th dose independent rect. 15 8
509 50.74 humidity 70.0 4320 > th dose dependent sin 3 NA
560 50.78 humidity 70.0 4320 > th dose independent rect. 8 9
581 50.79 humidity 50.0 14400 > th dose dependent rect. 8 1
582 50.79 humidity 50.0 4320 > th dose dependent rect. 6 2
648 50.82 humidity 80.0 14400 < th dose dependent sin 8 NA
673 50.83 humidity 50.0 4320 > th dose dependent rect. 23 15
758 50.86 atmosphere 1015.0 720 < th dose independent rect. 3 8
759 50.86 humidity 80.0 4320 < th dose independent rect. 5 13
780 50.87 humidity 70.0 4320 > th dose independent sin 2 NA
781 50.87 humidity 60.0 14400 < th dose independent rect. 11 1
797 50.87 atmosphere 1000.0 30 > th dose independent rect. 8 18
808 50.88 atmosphere 1015.0 1440 < th dose independent rect. 3 1
830 50.89 humidity 70.0 1440 < th dose independent rect. 10 1
890 50.91 humidity 80.0 4320 < th dose independent sin 2 NA
940 50.92 humidity 90.0 4320 < th dose dependent rect. 3 13
947 50.93 humidity 70.0 4320 > th dose independent rect. 14 4
984 50.93 humidity 80.0 4320 < th dose dependent rect. 1 1
998 50.94 humidity 70.0 1440 > th dose independent rect. 10 1
999 50.94 humidity 60.0 14400 > th dose independent rect. 11 1