Os01g0160900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Leucine-rich repeat, plant specific containing protein.
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Os01g0160900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Leucine-rich repeat, plant specific containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = wind,
response mode = < th, dose dependency = dose dependent, type of G = sin)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 748.74 | 1.29 | 4.56 | 3.15 | 1.16 | -0.668 | 1.8 | -5.54 | 3 | 13.9 | 0.9052 | 15359 | 1.01 | -- |
| 778.2 | 1.3 | 4.4 | 3.97 | 0.943 | -2.3 | 1.16 | -- | 3.08 | 13.1 | 1.602 | 16171 | 3.26 | -- |
| 757.17 | 1.28 | 4.56 | 3.19 | 1.12 | -0.62 | -- | -5.47 | 3 | 14 | 0.9 | 16097 | 1.15 | -- |
| 775 | 1.3 | 4.4 | 3.95 | 1.11 | -3.36 | -- | -- | 3.11 | 14.1 | 1.641 | 16151 | 6.4 | -- |
| 831.36 | 1.34 | 4.57 | 3.17 | -- | -0.695 | -- | -5.14 | 2.97 | -- | 0.9654 | 16087 | 1.57 | -- |
| 838.47 | 1.36 | 4.38 | 2.84 | 1.09 | -- | 1.35 | -- | 3.16 | 14.1 | -- | -- | -- | -- |
| 845.35 | 1.36 | 4.37 | 2.88 | 1.09 | -- | -- | -- | 3.17 | 14.2 | -- | -- | -- | -- |
| 836.51 | 1.35 | 4.4 | 4.01 | -- | -3.57 | -- | -- | 3.03 | -- | 1.676 | 16171 | 6.55 | -- |
| 1059.46 | 1.52 | 4.44 | -- | 1.29 | 0.644 | -- | -- | 2.87 | 14.4 | 2.7 | 16275 | 3.73 | -- |
| 916.66 | 1.41 | 4.38 | 2.84 | -- | -- | -- | -- | 3.14 | -- | -- | -- | -- | -- |
| 1064.55 | 1.53 | 4.45 | -- | 1.04 | -- | -- | -- | 2.84 | 14.1 | -- | -- | -- | -- |
| 1010.51 | 1.48 | 4.54 | -- | -- | 2.16 | -- | -- | 2.43 | -- | 36.18 | 47520 | 1.8e-06 | -- |
| 1129.14 | 1.57 | 4.45 | -- | -- | -- | -- | -- | 2.82 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 718.75 | radiation | 10.0 | 43200 | > th | dose independent | rect. | 14 | 4 |
| 27 | 719.82 | radiation | 10.0 | 43200 | > th | dose independent | sin | 15 | NA |
| 89 | 724.31 | radiation | 30.0 | 43200 | > th | dose independent | rect. | 15 | 17 |
| 91 | 724.77 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 18 | 2 |
| 92 | 725.06 | radiation | 30.0 | 43200 | > th | dose independent | rect. | 15 | 2 |
| 115 | 726.37 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 18 | 2 |
| 116 | 726.44 | humidity | 70.0 | 43200 | > th | dose dependent | rect. | 18 | 1 |
| 233 | 730.78 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 17 | 4 |
| 234 | 730.81 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 13 | 1 |
| 236 | 731.00 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 3 | 1 |
| 237 | 731.20 | humidity | 70.0 | 43200 | > th | dose dependent | rect. | 17 | 3 |
| 254 | 731.98 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 16 | 5 |
| 257 | 732.79 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 3 | 1 |
| 260 | 733.16 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 3 | 1 |
| 261 | 733.16 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 3 | 1 |
| 283 | 733.79 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 19 | 2 |
| 292 | 734.91 | radiation | 20.0 | 43200 | < th | dose dependent | rect. | 15 | 1 |
| 297 | 735.15 | atmosphere | 1010.0 | 14400 | < th | dose independent | rect. | 13 | 1 |
| 299 | 735.19 | atmosphere | 1010.0 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 317 | 735.48 | atmosphere | 1010.0 | 14400 | > th | dose independent | rect. | 12 | 2 |
| 318 | 735.50 | humidity | 50.0 | 43200 | > th | dose independent | rect. | 13 | 2 |
| 322 | 735.55 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 15 | 1 |
| 338 | 735.73 | humidity | 70.0 | 43200 | > th | dose independent | rect. | 12 | 2 |
| 374 | 736.85 | atmosphere | 1010.0 | 14400 | < th | dose independent | rect. | 12 | 6 |
| 378 | 737.12 | atmosphere | 1010.0 | 14400 | < th | dose independent | rect. | 7 | 2 |
| 380 | 737.18 | atmosphere | 1010.0 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 393 | 737.43 | humidity | 50.0 | 43200 | < th | dose independent | rect. | 13 | 2 |
| 396 | 737.51 | atmosphere | 1010.0 | 14400 | > th | dose independent | rect. | 8 | 1 |
| 401 | 737.65 | atmosphere | 1010.0 | 14400 | < th | dose independent | rect. | 7 | 11 |
| 417 | 737.98 | atmosphere | 1010.0 | 14400 | < th | dose independent | rect. | 7 | 8 |
| 427 | 738.18 | atmosphere | 1010.0 | 14400 | < th | dose independent | rect. | 6 | 16 |
| 430 | 738.22 | humidity | 50.0 | 43200 | < th | dose independent | rect. | 11 | 4 |
| 437 | 738.28 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 462 | 738.54 | atmosphere | 1010.0 | 14400 | < th | dose independent | rect. | 12 | 11 |
| 463 | 738.56 | atmosphere | 1010.0 | 14400 | < th | dose independent | sin | 22 | NA |
| 486 | 738.74 | humidity | 50.0 | 43200 | < th | dose independent | rect. | 11 | 6 |
| 498 | 738.91 | atmosphere | 1010.0 | 14400 | > th | dose independent | rect. | 7 | 7 |
| 517 | 739.07 | atmosphere | 1010.0 | 14400 | > th | dose independent | rect. | 12 | 7 |
| 525 | 739.13 | atmosphere | 1010.0 | 14400 | > th | dose independent | rect. | 7 | 12 |
| 581 | 739.39 | atmosphere | 1010.0 | 14400 | > th | dose independent | rect. | 6 | 15 |
| 614 | 739.62 | humidity | 50.0 | 14400 | > th | dose dependent | rect. | 3 | 3 |
| 667 | 739.87 | atmosphere | 1010.0 | 14400 | < th | dose independent | rect. | 16 | 7 |
| 671 | 739.89 | atmosphere | 1010.0 | 14400 | > th | dose independent | sin | 22 | NA |
| 710 | 740.07 | humidity | 50.0 | 43200 | > th | dose independent | rect. | 24 | 15 |
| 711 | 740.07 | humidity | 50.0 | 43200 | > th | dose independent | rect. | 22 | 17 |
| 720 | 740.12 | humidity | 50.0 | 43200 | > th | dose independent | rect. | 2 | 13 |
| 737 | 740.19 | atmosphere | 1010.0 | 14400 | < th | dose independent | rect. | 12 | 22 |
| 814 | 740.52 | atmosphere | 1010.0 | 14400 | < th | dose independent | rect. | 20 | 22 |
| 834 | 740.62 | atmosphere | 1010.0 | 14400 | < th | dose independent | no | NA | NA |
| 836 | 740.63 | atmosphere | 1010.0 | 14400 | < th | dose independent | rect. | 16 | 23 |
| 851 | 740.70 | radiation | 1.0 | 43200 | > th | dose dependent | rect. | 15 | 1 |
| 883 | 740.83 | atmosphere | 1010.0 | 14400 | < th | dose independent | rect. | 21 | 1 |
| 906 | 740.90 | atmosphere | 1010.0 | 14400 | < th | dose independent | rect. | 9 | 23 |
| 978 | 741.16 | atmosphere | 1010.0 | 14400 | < th | dose independent | rect. | 20 | 3 |