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Os01g0160300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Zinc finger, CCHC-type domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.5 (0.0218) R2 : 0.7
β1 : -1.71 (0.0796) R2dD : 0.314 R2D : 0.158
β2 : 1.15 (0.0564) R2dC : 0.276 R2C : 0.191
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.851 (0.0464) R2dN8 : 0.297 R2N8 : 0.116
σ : 0.409
deviance : 76.13
__
_____
C
peak time of C : 6.92
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
63.51 0.374 10.5 -1.47 1.07 0.885 -0.921 0.0387 -0.667 7.9 28.6 40 -- --
63.39 0.371 10.4 -1.47 1.08 0.861 -0.925 -- -0.669 7.81 28.25 75 -- --
65.94 0.378 10.5 -1.48 1.07 0.88 -- 0.0736 -0.663 7.85 28.3 42 -- --
65.61 0.377 10.5 -1.49 1.05 0.871 -- -- -0.663 7.71 27.57 103 -- --
106.25 0.48 10.5 -1.37 -- 1.52 -- 0.134 -0.552 -- 30.23 462 -- --
74.6 0.405 10.5 -1.69 1.15 -- -0.773 -- -0.852 6.99 -- -- -- --
76.13 0.409 10.5 -1.71 1.15 -- -- -- -0.851 6.92 -- -- -- --
105.93 0.479 10.5 -1.3 -- 1.53 -- -- -0.541 -- 30.27 480 -- --
117.44 0.505 10.4 -- 0.96 1.5 -- -- -0.382 8.51 27.8 134 -- --
145.72 0.564 10.5 -1.68 -- -- -- -- -0.829 -- -- -- -- --
152.87 0.578 10.5 -- 1.13 -- -- -- -0.661 7.02 -- -- -- --
146.75 0.564 10.4 -- -- 1.99 -- -- -0.307 -- 29.8 509 -- --
220.37 0.693 10.5 -- -- -- -- -- -0.643 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 62.70 temperature 30 30 < th dose dependent rect. 19 23
2 62.73 temperature 30 30 < th dose dependent rect. 23 23
5 63.38 temperature 25 90 < th dose dependent rect. 5 18
6 63.56 temperature 30 30 < th dose dependent rect. 17 23
7 63.58 temperature 30 90 < th dose dependent rect. 1 23
8 63.61 temperature 30 90 < th dose dependent rect. 11 23
9 63.75 temperature 15 90 > th dose dependent rect. 20 23
14 63.82 temperature 30 30 < th dose dependent no NA NA
16 63.84 temperature 30 30 < th dose dependent rect. 13 23
17 63.89 temperature 25 90 < th dose dependent sin 20 NA
18 63.89 temperature 25 90 < th dose dependent rect. 3 22
19 63.91 temperature 30 30 < th dose dependent rect. 15 23
42 64.24 temperature 25 10 < th dose dependent rect. 5 19
58 64.35 temperature 15 90 > th dose dependent rect. 5 23
64 64.41 temperature 30 30 < th dose dependent rect. 9 23
83 64.53 temperature 30 30 < th dose dependent rect. 21 23
94 64.60 temperature 30 30 < th dose dependent rect. 19 21
102 64.63 temperature 30 30 < th dose dependent rect. 7 23
114 64.71 temperature 10 30 > th dose dependent no NA NA
143 64.84 temperature 25 90 < th dose dependent rect. 7 16
149 64.85 temperature 30 30 < th dose dependent rect. 17 19
169 64.93 temperature 20 30 > th dose dependent rect. 9 19
175 64.94 temperature 10 270 > th dose dependent rect. 18 23
218 65.06 temperature 10 720 > th dose dependent rect. 7 18
248 65.16 temperature 15 30 > th dose dependent rect. 9 23
256 65.18 temperature 15 270 > th dose dependent rect. 6 20
269 65.22 temperature 25 720 < th dose dependent rect. 7 15
274 65.23 temperature 25 10 > th dose independent sin 20 NA
284 65.25 temperature 25 90 < th dose dependent rect. 11 12
292 65.27 temperature 20 30 > th dose dependent rect. 9 17
302 65.29 temperature 25 90 < th dose dependent rect. 9 14
323 65.34 temperature 25 720 > th dose independent rect. 15 2
341 65.36 temperature 30 30 < th dose dependent rect. 19 17
375 65.45 atmosphere 1010 1440 < th dose independent rect. 7 1
425 65.56 temperature 20 30 > th dose dependent rect. 15 23
455 65.63 atmosphere 1010 1440 < th dose independent rect. 7 3
468 65.65 temperature 25 90 < th dose independent sin 20 NA
469 65.65 temperature 10 720 > th dose dependent rect. 11 15
473 65.66 temperature 25 90 < th dose independent rect. 5 18
481 65.67 temperature 25 10 > th dose independent rect. 9 16
491 65.69 temperature 25 90 > th dose independent rect. 9 10
492 65.69 temperature 10 720 > th dose dependent sin 20 NA
493 65.69 atmosphere 1010 4320 > th dose dependent rect. 23 3
494 65.69 atmosphere 1010 4320 > th dose dependent rect. 20 7
500 65.70 temperature 25 270 < th dose independent rect. 11 10
514 65.71 humidity 80 43200 > th dose independent rect. 16 8
552 65.75 atmosphere 1010 4320 > th dose dependent rect. 1 1
598 65.79 temperature 20 30 > th dose dependent rect. 3 23
649 65.84 atmosphere 1010 4320 < th dose independent rect. 19 1
655 65.85 atmosphere 1010 4320 > th dose independent rect. 19 1
677 65.87 temperature 25 720 < th dose independent rect. 8 12
714 65.90 temperature 10 720 > th dose dependent rect. 13 13
722 65.91 atmosphere 1010 4320 > th dose dependent sin 12 NA
754 65.94 temperature 25 720 > th dose independent rect. 13 5
756 65.94 temperature 10 30 > th dose dependent sin 18 NA
787 65.97 temperature 25 270 > th dose independent rect. 8 15
807 65.98 temperature 20 30 > th dose dependent rect. 13 23
825 66.00 temperature 25 1440 < th dose dependent rect. 21 2
851 66.03 temperature 20 720 > th dose independent sin 23 NA
906 66.06 temperature 25 90 < th dose independent rect. 11 12
917 66.07 temperature 25 720 < th dose independent sin 23 NA
920 66.07 wind 1 14400 > th dose dependent rect. 23 1
945 66.09 temperature 20 30 > th dose independent rect. 22 21
946 66.09 humidity 70 43200 > th dose dependent rect. 20 1
959 66.10 temperature 25 270 > th dose independent rect. 6 18
975 66.11 temperature 25 720 > th dose independent rect. 11 7