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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0160200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Leucine rich repeat, N-terminal domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.24 (0.0251) R2 : 3.12e-05
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.00629 (0.0528) R2dN8 : 4.03e-05 R2N8 : 3.12e-05
σ : 0.472
deviance : 102.22
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
95.69 0.46 3.18 0.249 0.199 0.389 0.548 -1.77 0.00692 8 50.38 4229 -- --
97.66 0.46 3.23 0.214 0.191 0.194 0.528 -- -0.0105 7.76 57 2482 -- --
96.46 0.457 3.19 0.263 0.203 0.398 -- -1.76 0.00421 7.24 51 4204 -- --
98.26 0.462 3.24 0.223 0.194 0.192 -- -- -0.012 7.09 57.24 2480 -- --
98.7 0.463 3.19 0.266 -- 0.396 -- -1.76 0.00888 -- 50.61 4204 -- --
98.3 0.465 3.23 0.174 0.201 -- 0.507 -- 0.0253 8.01 -- -- -- --
99.02 0.466 3.23 0.187 0.205 -- -- -- 0.0241 7.48 -- -- -- --
100.14 0.466 3.24 0.227 -- 0.245 -- -- -0.0199 -- 58.84 2276 -- --
99.46 0.464 3.24 -- 0.198 0.162 -- -- -0.0306 7.09 57.99 2345 -- --
101.27 0.47 3.23 0.19 -- -- -- -- 0.0274 -- -- -- -- --
99.94 0.468 3.23 -- 0.207 -- -- -- 0.00331 7.42 -- -- -- --
101.44 0.469 3.24 -- -- 0.161 -- -- -0.0348 -- 64 2218 -- --
102.22 0.472 3.24 -- -- -- -- -- 0.00629 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 91.50 wind 1.0 1440 < th dose dependent rect. 1 1
5 92.68 radiation 20.0 30 > th dose independent sin 10 NA
8 92.98 radiation 20.0 30 < th dose independent sin 10 NA
10 93.17 radiation 1.0 43200 < th dose dependent rect. 3 1
13 93.47 wind 7.0 90 > th dose independent rect. 1 8
14 93.50 wind 7.0 90 > th dose dependent rect. 1 8
16 93.52 radiation 20.0 90 > th dose independent rect. 7 2
21 93.60 wind 7.0 90 > th dose independent rect. 8 1
26 93.60 wind 7.0 90 > th dose dependent rect. 8 1
60 93.68 temperature 25.0 270 < th dose dependent rect. 5 2
61 93.69 atmosphere 1005.0 90 > th dose dependent rect. 1 3
63 93.73 atmosphere 1005.0 90 > th dose dependent rect. 2 1
86 93.83 wind 1.0 90 < th dose dependent rect. 6 1
90 93.88 wind 1.0 1440 < th dose independent rect. 24 2
110 93.97 temperature 25.0 270 < th dose independent rect. 6 2
131 94.05 wind 1.0 1440 < th dose dependent rect. 15 11
139 94.15 atmosphere 1005.0 10 < th dose independent rect. 8 1
155 94.26 temperature 10.0 30 > th dose dependent rect. 3 23
209 94.35 humidity 90.0 30 < th dose independent rect. 7 4
212 94.37 wind 1.0 270 > th dose independent rect. 7 1
216 94.39 atmosphere 1005.0 10 > th dose independent rect. 2 1
218 94.40 temperature 30.0 90 < th dose dependent rect. 7 4
219 94.41 wind 3.0 10 < th dose independent rect. 2 1
220 94.41 wind 9.0 30 < th dose independent rect. 3 23
225 94.42 wind 1.0 90 < th dose dependent rect. 6 5
256 94.45 radiation 1.0 90 > th dose dependent rect. 7 2
263 94.48 temperature 25.0 90 > th dose independent rect. 2 1
265 94.48 temperature 25.0 90 > th dose dependent rect. 2 1
273 94.52 temperature 25.0 90 > th dose dependent rect. 1 3
277 94.54 temperature 30.0 30 < th dose dependent rect. 2 1
280 94.55 wind 1.0 30 > th dose independent rect. 2 1
287 94.56 wind 1.0 90 < th dose dependent rect. 6 7
293 94.57 atmosphere 995.0 30 > th dose independent rect. 3 23
297 94.58 wind 7.0 10 < th dose dependent rect. 2 1
300 94.58 temperature 20.0 720 > th dose dependent rect. 3 3
304 94.59 temperature 10.0 30 > th dose independent rect. 2 1
306 94.59 temperature 25.0 30 < th dose independent rect. 2 1
308 94.59 humidity 50.0 30 > th dose independent rect. 2 1
312 94.59 atmosphere 1010.0 30 < th dose independent rect. 2 1
315 94.59 radiation 1.0 30 < th dose independent rect. 2 1
320 94.59 precipitation 0.1 30 < th dose independent rect. 2 1
333 94.59 temperature 10.0 30 > th dose independent rect. 3 23
337 94.59 radiation 1.0 30 < th dose dependent rect. 2 1
343 94.59 precipitation 0.1 30 < th dose dependent rect. 2 1
351 94.61 wind 9.0 1440 < th dose independent rect. 3 1
352 94.61 temperature 10.0 1440 > th dose independent rect. 3 1
355 94.61 temperature 30.0 1440 < th dose independent rect. 3 1
359 94.61 humidity 50.0 1440 > th dose independent rect. 3 1
369 94.61 atmosphere 995.0 1440 > th dose independent rect. 3 1
371 94.61 radiation 1.0 1440 < th dose independent rect. 3 1
392 94.61 temperature 10.0 1440 > th dose independent rect. 4 23
395 94.61 radiation 1.0 1440 < th dose dependent rect. 3 1
422 94.62 temperature 10.0 30 > th dose dependent rect. 2 1
423 94.62 humidity 50.0 30 > th dose dependent rect. 2 1
434 94.63 atmosphere 1015.0 30 < th dose dependent rect. 2 1
438 94.64 temperature 25.0 90 > th dose independent rect. 1 3
459 94.65 wind 1.0 1440 < th dose dependent rect. 24 6
461 94.66 wind 1.0 1440 < th dose dependent rect. 5 1
480 94.71 wind 1.0 270 > th dose independent rect. 5 3
485 94.72 humidity 90.0 30 > th dose independent rect. 2 1
491 94.73 humidity 90.0 90 < th dose independent rect. 7 2
499 94.75 precipitation 0.1 30 < th dose independent rect. 3 23
500 94.75 precipitation 0.1 30 < th dose dependent rect. 3 23
506 94.78 temperature 20.0 270 > th dose independent rect. 7 1
524 94.79 wind 7.0 720 > th dose independent rect. 15 1
530 94.79 radiation 1.0 90 > th dose dependent rect. 4 5
553 94.83 wind 1.0 1440 > th dose independent rect. 24 2
556 94.83 radiation 40.0 90 > th dose dependent rect. 8 1
590 94.90 wind 5.0 720 < th dose independent rect. 24 6
625 94.95 temperature 25.0 270 < th dose dependent rect. 4 13
626 94.96 radiation 1.0 14400 > th dose independent rect. 16 1
630 94.97 radiation 1.0 14400 < th dose independent rect. 16 1
631 94.97 wind 1.0 30 > th dose independent rect. 7 4
662 95.01 temperature 25.0 1440 < th dose independent rect. 20 2
675 95.04 temperature 25.0 10 < th dose independent rect. 6 21
682 95.06 radiation 20.0 90 < th dose dependent sin 9 NA
684 95.07 humidity 90.0 90 < th dose independent rect. 1 4
687 95.08 wind 1.0 270 > th dose independent rect. 4 5
700 95.10 wind 1.0 270 > th dose dependent rect. 7 1
730 95.15 temperature 25.0 10 > th dose independent rect. 11 22
737 95.16 temperature 10.0 30 > th dose dependent rect. 11 20
740 95.17 humidity 60.0 10 > th dose independent rect. 7 4
742 95.18 temperature 20.0 270 > th dose independent rect. 3 3
749 95.19 temperature 20.0 720 > th dose dependent rect. 19 17
760 95.22 radiation 30.0 10 < th dose independent rect. 7 4
761 95.22 radiation 20.0 30 < th dose independent rect. 18 15
777 95.23 temperature 25.0 1440 > th dose independent rect. 20 2
798 95.26 wind 7.0 720 < th dose independent rect. 16 14
810 95.28 radiation 30.0 270 < th dose independent rect. 7 1
816 95.28 temperature 10.0 1440 > th dose independent rect. 8 4
819 95.28 atmosphere 995.0 1440 > th dose independent rect. 8 4
828 95.28 radiation 20.0 30 < th dose independent rect. 3 6
829 95.28 wind 1.0 10 > th dose independent rect. 24 7
845 95.28 temperature 10.0 1440 > th dose independent rect. 12 20
852 95.29 temperature 15.0 90 > th dose independent rect. 7 4
853 95.29 wind 1.0 30 < th dose independent rect. 2 6
861 95.30 wind 7.0 720 < th dose independent rect. 18 9
862 95.30 atmosphere 995.0 30 > th dose independent rect. 11 20
877 95.31 wind 9.0 30 < th dose independent rect. 7 4
878 95.31 precipitation 0.1 30 < th dose independent rect. 7 4
879 95.31 wind 7.0 720 < th dose independent rect. 17 12
882 95.31 precipitation 0.1 30 < th dose dependent rect. 7 4
883 95.31 wind 1.0 90 < th dose dependent rect. 6 9
884 95.31 temperature 20.0 720 > th dose dependent rect. 21 10
889 95.32 atmosphere 995.0 30 > th dose independent rect. 7 4
890 95.32 atmosphere 1015.0 30 < th dose independent rect. 7 4
891 95.32 temperature 25.0 720 < th dose independent rect. 20 12
892 95.32 temperature 10.0 30 > th dose independent rect. 11 20
893 95.32 temperature 20.0 720 > th dose dependent sin 8 NA
895 95.32 wind 1.0 30 > th dose dependent rect. 7 4
945 95.35 wind 1.0 30 < th dose independent rect. 2 4
951 95.35 temperature 25.0 10 < th dose independent rect. 16 19
962 95.35 temperature 30.0 30 < th dose dependent rect. 7 20
979 95.37 temperature 30.0 720 < th dose dependent rect. 23 1
980 95.37 radiation 1.0 43200 < th dose dependent rect. 1 3
985 95.37 wind 1.0 1440 < th dose dependent rect. 15 15
990 95.38 precipitation 0.1 270 < th dose independent rect. 7 1