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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0159600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Small hydrophilic plant seed protein family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.96 (0.0323) R2 : 0.198
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 4.92 (0.469) R2dE : 0.194 R2E : 0.194
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0862 (0.0679) R2dN8 : 0.00367 R2N8 : 0.0045
σ : 0.606
deviance : 169.28
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C
peak time of C : --
E
wheather : wind
threshold : 0.4609
memory length : 5
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 0.914
open length of G : 2.38

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
167.74 0.609 2.95 0.128 0.084 5.14 0.532 1.41 -0.072 5.86 0.2466 12 0.649 2.09
167.99 0.604 2.95 0.133 0.0825 5.15 0.562 -- -0.0712 5.7 0.2516 14 0.635 2.08
168.39 0.609 2.96 0.122 0.0913 4.62 -- -1.09 -0.0737 7.05 0.2466 12 0.649 2.09
168.39 0.604 2.95 0.127 0.0916 4.9 -- -- -0.0729 7.07 0.4813 5 0.605 1.96
168.82 0.608 2.96 0.124 -- 4.63 -- -1.1 -0.072 -- 0.2466 12 0.649 2.09
207.59 0.675 2.96 0.146 0.13 -- 0.611 -- -0.0954 4.92 -- -- -- --
208.55 0.676 2.96 0.145 0.134 -- -- -- -0.0984 4.86 -- -- -- --
168.83 0.605 2.96 0.13 -- 4.91 -- -- -0.0719 -- 0.4828 5 0.746 2.14
168.83 0.605 2.96 -- 0.0927 4.91 -- -- -0.0878 6.97 0.478 6 0.699 2.07
209.5 0.676 2.96 0.15 -- -- -- -- -0.0949 -- -- -- -- --
209.1 0.676 2.96 -- 0.137 -- -- -- -0.115 4.82 -- -- -- --
169.28 0.606 2.96 -- -- 4.92 -- -- -0.0862 -- 0.4609 5 0.914 2.38
210.09 0.677 2.97 -- -- -- -- -- -0.112 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 169.74 wind 1 10 < th dose dependent rect. 1 1
7 178.68 wind 1 10 < th dose independent rect. 1 1
9 183.77 wind 7 1440 > th dose dependent rect. 1 2
10 183.78 wind 7 1440 > th dose independent rect. 1 2
30 185.42 wind 1 10 < th dose dependent rect. 11 15
56 188.26 wind 1 10 < th dose dependent rect. 7 19
64 188.68 wind 1 10 < th dose independent rect. 22 4
76 189.06 radiation 20 90 > th dose independent rect. 16 16
77 189.07 wind 1 90 < th dose dependent rect. 6 1
79 189.36 wind 1 10 < th dose independent rect. 11 15
88 190.15 radiation 10 90 > th dose independent rect. 17 14
98 190.93 radiation 20 10 > th dose independent rect. 16 17
100 191.07 radiation 20 10 > th dose independent rect. 8 1
134 191.57 humidity 50 10 < th dose independent rect. 17 20
138 191.69 humidity 50 10 < th dose independent rect. 17 1
190 192.28 radiation 10 90 > th dose dependent rect. 16 16
191 192.60 humidity 50 10 < th dose dependent rect. 17 20
194 192.66 humidity 50 10 < th dose independent sin 8 NA
195 192.70 humidity 50 10 < th dose dependent rect. 17 1
231 192.97 wind 1 10 < th dose independent rect. 7 19
235 193.51 radiation 20 10 > th dose dependent rect. 8 1
237 193.64 wind 1 10 < th dose dependent sin 17 NA
239 193.98 radiation 10 10 > th dose dependent rect. 17 15
288 194.64 humidity 50 10 < th dose dependent sin 9 NA
331 195.25 radiation 10 10 > th dose independent rect. 17 1
365 195.61 radiation 20 10 > th dose independent sin 11 NA
367 195.70 radiation 10 90 > th dose independent sin 12 NA
386 195.79 radiation 20 10 < th dose independent sin 11 NA
416 196.51 atmosphere 1005 10 < th dose independent rect. 6 3
418 196.58 atmosphere 1005 10 < th dose independent rect. 8 1
526 197.25 radiation 10 30 > th dose dependent rect. 17 1
618 197.63 humidity 90 30 < th dose independent rect. 7 1
633 197.87 wind 1 270 < th dose dependent rect. 22 1
699 198.52 humidity 50 10 > th dose independent sin 11 NA
738 198.86 wind 1 270 < th dose independent rect. 22 1
838 199.27 humidity 50 10 < th dose dependent rect. 14 23
906 199.38 humidity 50 10 < th dose dependent no NA NA
907 199.38 humidity 50 10 < th dose dependent rect. 11 7