FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0159500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.12 (0.0153) R2 : 0.0128
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0786 (0.0323) R2dN8 : 0.0166 R2N8 : 0.0128
σ : 0.289
deviance : 38.34
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
35.44 0.28 3.12 0.173 0.114 0.201 0.108 0.892 -0.0934 9.01 89.05 5890 -- --
36.56 0.282 3.12 0.126 0.12 0.241 0.127 -- -0.119 9.47 107.4 5500 -- --
35.47 0.277 3.12 0.179 0.115 0.202 -- 0.893 -0.0942 8.66 89.67 5900 -- --
36.6 0.282 3.12 0.131 0.138 0.208 -- -- -0.107 8.61 98.48 4845 -- --
36.22 0.28 3.13 0.177 -- 0.205 -- 0.879 -0.0935 -- 89.34 5876 -- --
37.27 0.286 3.11 0.105 0.113 -- 0.102 -- -0.0674 8.95 -- -- -- --
37.3 0.286 3.11 0.108 0.114 -- -- -- -0.0676 8.62 -- -- -- --
37.33 0.285 3.13 0.123 -- 0.23 -- -- -0.111 -- 89 5838 -- --
36.96 0.283 3.13 -- 0.136 0.224 -- -- -0.133 8.07 102.4 4788 -- --
38.03 0.288 3.12 0.109 -- -- -- -- -0.0666 -- -- -- -- --
37.61 0.287 3.11 -- 0.114 -- -- -- -0.0796 8.55 -- -- -- --
37.72 0.286 3.13 -- -- 0.214 -- -- -0.12 -- 88 5824 -- --
38.34 0.289 3.12 -- -- -- -- -- -0.0786 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 31.80 temperature 20.0 30 > th dose dependent rect. 2 1
2 31.83 temperature 20.0 30 > th dose independent rect. 2 1
3 31.89 atmosphere 1005.0 30 > th dose independent rect. 2 1
5 31.89 atmosphere 1000.0 30 > th dose dependent rect. 2 1
10 31.98 wind 3.0 30 < th dose independent rect. 2 1
13 32.00 wind 5.0 30 < th dose dependent rect. 2 1
16 32.01 humidity 80.0 30 > th dose independent rect. 2 1
18 32.02 temperature 10.0 30 > th dose independent rect. 2 1
20 32.02 temperature 30.0 30 < th dose independent rect. 2 1
21 32.02 humidity 50.0 30 > th dose independent rect. 2 1
25 32.02 atmosphere 1010.0 30 < th dose independent rect. 2 1
27 32.02 radiation 1.0 30 < th dose independent rect. 2 1
32 32.02 precipitation 0.1 30 < th dose independent rect. 2 1
33 32.02 temperature 10.0 30 > th dose independent rect. 3 23
34 32.02 humidity 50.0 30 > th dose dependent rect. 2 1
37 32.02 radiation 1.0 30 < th dose dependent rect. 2 1
42 32.02 precipitation 0.1 30 < th dose dependent rect. 2 1
48 32.26 atmosphere 1015.0 30 < th dose dependent rect. 2 1
49 32.32 wind 1.0 30 > th dose independent rect. 2 1
51 32.35 temperature 30.0 30 < th dose dependent rect. 2 1
56 32.57 radiation 1.0 43200 < th dose dependent rect. 3 1
78 32.94 wind 9.0 1440 < th dose independent rect. 3 1
79 32.94 temperature 10.0 1440 > th dose independent rect. 3 1
82 32.94 temperature 30.0 1440 < th dose independent rect. 3 1
87 32.94 humidity 50.0 1440 > th dose independent rect. 3 1
96 32.94 atmosphere 995.0 1440 > th dose independent rect. 3 1
97 32.94 radiation 1.0 1440 < th dose independent rect. 3 1
117 32.94 temperature 10.0 1440 > th dose independent rect. 4 23
162 33.31 wind 9.0 30 < th dose independent rect. 3 23
168 33.57 atmosphere 1000.0 30 > th dose independent rect. 3 23
175 33.64 precipitation 0.1 30 < th dose independent rect. 3 23
177 33.64 precipitation 0.1 30 < th dose dependent rect. 3 23
236 34.48 humidity 90.0 90 < th dose independent rect. 2 1
239 34.57 temperature 30.0 10 > th dose independent rect. 10 1
243 34.59 humidity 50.0 30 > th dose independent rect. 3 23
250 34.72 humidity 80.0 14400 < th dose dependent rect. 3 6
255 34.83 temperature 25.0 270 > th dose independent rect. 23 4
285 35.06 humidity 80.0 90 < th dose independent rect. 5 5
288 35.06 humidity 80.0 14400 < th dose dependent rect. 22 12
300 35.10 humidity 80.0 30 < th dose independent rect. 7 3
314 35.13 humidity 70.0 14400 > th dose independent rect. 8 1
321 35.15 wind 1.0 10 > th dose independent rect. 10 10
322 35.16 humidity 80.0 30 < th dose independent rect. 9 1
330 35.18 humidity 80.0 30 < th dose independent rect. 24 10
351 35.25 wind 1.0 14400 < th dose dependent rect. 6 1
355 35.26 humidity 70.0 14400 > th dose independent rect. 6 3
357 35.26 humidity 70.0 14400 < th dose independent rect. 6 4
402 35.28 humidity 70.0 14400 < th dose independent rect. 8 1
411 35.30 wind 5.0 14400 < th dose independent rect. 11 1
413 35.30 atmosphere 1005.0 10 < th dose independent rect. 8 2
464 35.34 radiation 20.0 30 > th dose independent rect. 9 1
473 35.35 humidity 90.0 30 < th dose dependent rect. 7 3
480 35.37 radiation 1.0 30 > th dose dependent rect. 7 3
487 35.38 humidity 90.0 30 < th dose dependent rect. 5 5
489 35.39 wind 1.0 10 < th dose independent rect. 14 4
502 35.41 radiation 20.0 90 > th dose independent rect. 16 18
512 35.42 wind 1.0 10 < th dose independent rect. 12 6
528 35.42 humidity 70.0 4320 > th dose dependent rect. 3 7
529 35.42 humidity 90.0 30 < th dose dependent rect. 1 9
549 35.43 atmosphere 995.0 720 > th dose independent rect. 23 16
563 35.44 radiation 20.0 90 > th dose independent rect. 6 4
596 35.45 precipitation 0.1 720 < th dose independent rect. 15 8
600 35.45 precipitation 0.1 720 < th dose dependent rect. 15 8
609 35.46 wind 1.0 10 < th dose dependent rect. 14 4
614 35.46 wind 3.0 30 < th dose dependent rect. 2 11
620 35.47 temperature 30.0 30 < th dose independent rect. 3 23
646 35.48 humidity 50.0 4320 > th dose dependent rect. 23 14
648 35.48 radiation 1.0 30 < th dose dependent rect. 2 14
650 35.48 radiation 1.0 30 > th dose dependent rect. 17 17
651 35.49 humidity 70.0 4320 > th dose independent rect. 10 1
671 35.49 wind 1.0 10 < th dose independent rect. 13 14
677 35.49 radiation 20.0 90 > th dose independent rect. 12 22
679 35.49 temperature 25.0 10 > th dose dependent rect. 9 1
686 35.49 humidity 50.0 4320 > th dose dependent rect. 2 11
687 35.49 humidity 90.0 30 < th dose dependent rect. 20 14
691 35.50 humidity 70.0 4320 < th dose independent rect. 10 1
732 35.50 humidity 60.0 14400 < th dose dependent rect. 12 1
799 35.53 wind 5.0 14400 > th dose independent rect. 11 1
823 35.53 radiation 40.0 90 > th dose dependent rect. 8 1
859 35.54 humidity 70.0 4320 > th dose independent sin 4 NA
870 35.54 humidity 50.0 4320 > th dose dependent sin 5 NA
871 35.54 humidity 80.0 4320 > th dose dependent rect. 7 2
879 35.54 radiation 1.0 30 < th dose dependent rect. 2 12
925 35.55 humidity 90.0 4320 < th dose dependent sin 5 NA
928 35.55 humidity 50.0 4320 > th dose dependent rect. 11 2
930 35.55 humidity 90.0 4320 < th dose dependent rect. 11 2
970 35.56 radiation 1.0 30 < th dose independent rect. 2 12
995 35.56 humidity 90.0 4320 < th dose dependent rect. 3 10