Os01g0158600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Leucine rich repeat, N-terminal domain containing protein.
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Os01g0158600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Leucine rich repeat, N-terminal domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = wind,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 99.85 | 0.469 | 7.88 | -0.176 | 0.301 | 0.293 | 1.51 | -6.09 | -0.0637 | 18.1 | 4.15 | 2526 | -- | -- |
| 108.3 | 0.485 | 7.96 | -0.138 | 0.355 | 1.19 | 1.38 | -- | -0.108 | 18.2 | 6.257 | 2544 | -- | -- |
| 104.63 | 0.476 | 7.87 | -0.136 | 0.313 | 0.441 | -- | -5.73 | -0.0378 | 18.9 | 4.302 | 2543 | -- | -- |
| 111.47 | 0.492 | 7.96 | -0.0285 | 0.371 | 1.3 | -- | -- | -0.0487 | 19.9 | 6.461 | 2544 | -- | -- |
| 110.22 | 0.489 | 7.86 | -0.216 | -- | 0.217 | -- | -6.52 | -0.0634 | -- | 3.989 | 2543 | -- | -- |
| 131.88 | 0.538 | 7.99 | -0.352 | 0.204 | -- | 1.94 | -- | -0.215 | 17.1 | -- | -- | -- | -- |
| 135.13 | 0.544 | 8 | -0.356 | 0.395 | -- | -- | -- | -0.208 | 20.7 | -- | -- | -- | -- |
| 118.55 | 0.507 | 7.95 | 0.00351 | -- | 1.32 | -- | -- | -0.0639 | -- | 6.2 | 2497 | -- | -- |
| 111.39 | 0.492 | 7.96 | -- | 0.367 | 1.29 | -- | -- | -0.0564 | 20.1 | 6.433 | 2546 | -- | -- |
| 143.93 | 0.561 | 7.99 | -0.357 | -- | -- | -- | -- | -0.211 | -- | -- | -- | -- | -- |
| 138.47 | 0.55 | 7.99 | -- | 0.396 | -- | -- | -- | -0.168 | 20.6 | -- | -- | -- | -- |
| 118.55 | 0.507 | 7.95 | -- | -- | 1.32 | -- | -- | -0.0685 | -- | 6.2 | 2494 | -- | -- |
| 147.29 | 0.566 | 7.98 | -- | -- | -- | -- | -- | -0.172 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 89.29 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 2 | 2 |
| 2 | 89.30 | precipitation | 0.1 | 270 | > th | dose dependent | rect. | 2 | 2 |
| 5 | 94.09 | wind | 5.0 | 720 | > th | dose independent | rect. | 21 | 2 |
| 10 | 94.88 | wind | 3.0 | 720 | > th | dose dependent | rect. | 21 | 2 |
| 13 | 95.44 | wind | 7.0 | 4320 | > th | dose independent | rect. | 17 | 4 |
| 15 | 95.64 | wind | 7.0 | 4320 | < th | dose independent | rect. | 17 | 4 |
| 20 | 96.89 | wind | 7.0 | 4320 | > th | dose dependent | rect. | 17 | 4 |
| 23 | 97.17 | wind | 5.0 | 720 | < th | dose independent | rect. | 21 | 6 |
| 53 | 98.83 | wind | 7.0 | 4320 | > th | dose independent | rect. | 17 | 11 |
| 54 | 98.89 | wind | 7.0 | 4320 | > th | dose independent | rect. | 17 | 9 |
| 59 | 98.95 | wind | 5.0 | 720 | > th | dose independent | rect. | 17 | 13 |
| 60 | 98.99 | wind | 7.0 | 4320 | < th | dose independent | rect. | 17 | 11 |
| 65 | 99.08 | wind | 7.0 | 4320 | < th | dose independent | rect. | 17 | 9 |
| 121 | 99.91 | wind | 5.0 | 4320 | > th | dose dependent | rect. | 17 | 11 |
| 137 | 100.14 | wind | 5.0 | 720 | > th | dose independent | sin | 13 | NA |
| 149 | 100.28 | wind | 5.0 | 720 | < th | dose independent | sin | 12 | NA |
| 171 | 100.58 | wind | 7.0 | 720 | < th | dose independent | rect. | 17 | 10 |
| 177 | 100.62 | wind | 5.0 | 720 | < th | dose independent | rect. | 17 | 12 |
| 219 | 101.21 | wind | 5.0 | 720 | < th | dose independent | rect. | 17 | 15 |
| 270 | 101.73 | wind | 5.0 | 720 | > th | dose dependent | rect. | 17 | 14 |
| 317 | 102.16 | wind | 7.0 | 4320 | > th | dose independent | sin | 13 | NA |
| 346 | 102.42 | wind | 7.0 | 4320 | < th | dose independent | sin | 13 | NA |
| 435 | 103.22 | wind | 5.0 | 720 | > th | dose independent | rect. | 18 | 6 |
| 437 | 103.23 | wind | 5.0 | 4320 | > th | dose dependent | sin | 13 | NA |
| 452 | 103.33 | wind | 5.0 | 4320 | < th | dose independent | rect. | 21 | 1 |
| 482 | 103.61 | wind | 5.0 | 720 | > th | dose dependent | sin | 12 | NA |
| 525 | 103.89 | wind | 5.0 | 4320 | > th | dose independent | rect. | 21 | 1 |
| 625 | 104.60 | precipitation | 0.1 | 270 | < th | dose independent | sin | 9 | NA |
| 629 | 104.60 | precipitation | 0.1 | 270 | < th | dose dependent | sin | 9 | NA |
| 654 | 104.71 | temperature | 20.0 | 270 | > th | dose independent | rect. | 21 | 10 |
| 669 | 104.82 | precipitation | 0.1 | 90 | < th | dose independent | sin | 7 | NA |
| 672 | 104.82 | precipitation | 0.1 | 90 | < th | dose dependent | sin | 7 | NA |
| 676 | 104.84 | temperature | 20.0 | 720 | > th | dose independent | rect. | 19 | 11 |
| 723 | 105.13 | wind | 5.0 | 270 | > th | dose independent | rect. | 23 | 8 |
| 729 | 105.21 | wind | 7.0 | 270 | > th | dose independent | rect. | 1 | 7 |
| 733 | 105.24 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 10 | 3 |
| 805 | 105.54 | wind | 7.0 | 270 | > th | dose dependent | rect. | 1 | 7 |
| 827 | 105.70 | wind | 5.0 | 270 | > th | dose dependent | rect. | 23 | 8 |
| 830 | 105.73 | temperature | 20.0 | 720 | < th | dose independent | rect. | 22 | 7 |
| 855 | 105.85 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 857 | 105.85 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 923 | 106.25 | temperature | 20.0 | 720 | > th | dose independent | rect. | 20 | 6 |
| 992 | 106.66 | wind | 9.0 | 720 | > th | dose dependent | rect. | 19 | 7 |