FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0157500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.11 (0.0253) R2 : 1.23e-05
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.00398 (0.0532) R2dN8 : 1.59e-05 R2N8 : 1.23e-05
σ : 0.476
deviance : 103.81
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
93.71 0.455 3.13 -0.447 0.00644 0.956 0.164 -3.14 -0.0337 17.9 0.8386 4 -- --
97.89 0.464 3.11 -0.43 0.0109 0.359 -0.308 -- -0.044 3.75 0.9607 4 -- --
93.77 0.451 3.12 -0.449 0.0133 0.962 -- -3.19 -0.0321 15.8 0.8386 4 -- --
98.14 0.461 3.11 -0.425 0.0244 0.372 -- -- -0.0407 7.26 0.9167 4 -- --
93.02 0.449 3.13 -0.45 -- 1.13 -- -3.73 -0.0323 -- 0.0001858 4 -- --
99.18 0.467 3.12 -0.408 0.0506 -- -0.276 -- -0.0515 4.52 -- -- -- --
99.38 0.467 3.11 -0.406 0.0498 -- -- -- -0.0501 5.06 -- -- -- --
98.16 0.461 3.11 -0.429 -- 0.379 -- -- -0.0414 -- 0.9625 4 -- --
102.93 0.475 3.1 -- 0.0227 0.281 -- -- 0.00335 7.66 0.9167 4 -- --
99.51 0.466 3.12 -0.404 -- -- -- -- -0.0488 -- -- -- -- --
103.72 0.476 3.1 -- 0.0428 -- -- -- -0.00488 5.38 -- -- -- --
102.89 0.474 3.1 -- -- 0.292 -- -- 0.00345 -- 0.9625 4 -- --
103.81 0.476 3.11 -- -- -- -- -- -0.00398 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 87.61 wind 1.0 10 < th dose dependent rect. 1 2
3 87.66 wind 7.0 1440 > th dose independent rect. 2 1
8 87.66 wind 7.0 1440 > th dose dependent rect. 2 1
19 88.35 wind 1.0 10 < th dose dependent rect. 15 12
42 89.19 wind 1.0 10 < th dose dependent rect. 6 21
47 89.73 wind 1.0 10 < th dose independent rect. 1 1
97 91.73 wind 1.0 270 < th dose dependent rect. 22 1
118 92.44 wind 1.0 10 < th dose independent rect. 6 20
121 92.51 wind 1.0 270 < th dose independent rect. 22 1
127 92.70 wind 1.0 10 < th dose dependent sin 17 NA
133 92.93 wind 1.0 10 < th dose independent rect. 5 22
181 93.54 atmosphere 1000.0 90 < th dose dependent rect. 5 3
185 93.59 atmosphere 1000.0 90 < th dose independent rect. 5 3
186 93.59 atmosphere 1000.0 10 < th dose independent rect. 5 4
188 93.60 atmosphere 1000.0 270 < th dose independent rect. 4 1
190 93.60 atmosphere 1000.0 270 < th dose dependent rect. 4 1
195 93.64 atmosphere 1000.0 10 < th dose dependent rect. 5 4
196 93.65 wind 1.0 10 < th dose dependent rect. 6 2
222 94.13 temperature 20.0 10 > th dose dependent rect. 23 4
241 94.47 wind 1.0 30 > th dose independent rect. 19 14
250 94.56 wind 1.0 270 < th dose dependent rect. 18 5
251 94.57 temperature 20.0 30 > th dose independent rect. 23 4
257 94.61 wind 3.0 1440 < th dose dependent rect. 22 1
269 94.66 wind 1.0 10 < th dose independent sin 17 NA
270 94.66 wind 7.0 10 < th dose independent rect. 3 13
271 94.67 wind 1.0 10 < th dose independent rect. 7 1
282 94.76 temperature 20.0 270 > th dose dependent rect. 23 1
287 94.82 radiation 30.0 10 > th dose independent rect. 7 2
327 94.90 temperature 20.0 30 > th dose dependent rect. 1 1
328 94.91 radiation 30.0 10 > th dose dependent rect. 7 1
356 94.92 wind 1.0 10 < th dose dependent rect. 1 11
370 94.94 wind 1.0 270 < th dose dependent rect. 16 10
478 95.23 temperature 10.0 30 > th dose dependent rect. 16 11
486 95.30 temperature 30.0 720 > th dose independent rect. 17 2
500 95.30 wind 1.0 10 > th dose independent rect. 12 21
507 95.33 wind 1.0 270 < th dose dependent rect. 9 17
513 95.37 wind 1.0 10 < th dose independent rect. 24 6
514 95.37 wind 1.0 270 > th dose independent rect. 1 13
517 95.38 temperature 20.0 270 > th dose independent rect. 23 1
521 95.40 temperature 30.0 1440 < th dose independent rect. 18 4
522 95.40 temperature 15.0 90 > th dose independent rect. 3 13
526 95.41 temperature 20.0 30 > th dose dependent rect. 23 7
528 95.43 temperature 30.0 1440 < th dose independent rect. 18 6
530 95.43 temperature 20.0 30 > th dose independent rect. 16 11
531 95.43 temperature 25.0 30 > th dose dependent rect. 23 1
532 95.43 temperature 25.0 90 > th dose dependent rect. 6 2
535 95.44 wind 9.0 14400 > th dose independent rect. 1 1
538 95.44 wind 9.0 14400 > th dose dependent rect. 1 1
540 95.44 temperature 10.0 10 > th dose dependent rect. 3 13
547 95.46 temperature 25.0 90 > th dose dependent rect. 4 4
552 95.48 atmosphere 995.0 90 > th dose dependent rect. 9 10
554 95.50 wind 9.0 1440 < th dose independent rect. 4 6
557 95.51 atmosphere 1005.0 10 > th dose independent rect. 3 7
578 95.57 temperature 20.0 270 > th dose dependent rect. 21 5
591 95.61 temperature 30.0 1440 < th dose independent rect. 18 1
595 95.61 atmosphere 1000.0 30 > th dose independent rect. 3 13
608 95.64 humidity 70.0 10 < th dose independent rect. 7 1
670 95.64 humidity 70.0 10 < th dose dependent rect. 7 1
757 95.66 atmosphere 1000.0 90 > th dose independent rect. 19 14
762 95.67 wind 1.0 14400 > th dose independent rect. 17 10
775 95.71 wind 1.0 10 < th dose dependent rect. 13 19
886 95.79 atmosphere 1000.0 30 > th dose dependent rect. 3 6
889 95.80 radiation 10.0 10 < th dose independent rect. 16 11
894 95.81 wind 1.0 720 > th dose independent rect. 17 6
900 95.82 wind 9.0 1440 < th dose independent rect. 7 3
909 95.83 precipitation 0.1 14400 > th dose independent rect. 11 1
919 95.83 precipitation 0.1 14400 > th dose dependent rect. 11 1
928 95.85 atmosphere 1000.0 30 < th dose independent rect. 2 7
929 95.85 wind 1.0 90 > th dose independent rect. 9 10
937 95.85 radiation 40.0 10 < th dose dependent rect. 16 11
947 95.86 radiation 10.0 10 < th dose independent rect. 9 18
951 95.87 temperature 25.0 90 > th dose independent rect. 6 2
958 95.88 wind 9.0 14400 < th dose independent rect. 9 1
960 95.88 wind 1.0 270 < th dose dependent rect. 5 1
973 95.90 atmosphere 1000.0 90 > th dose independent rect. 9 10
974 95.90 temperature 30.0 1440 < th dose independent rect. 18 12
987 95.92 temperature 30.0 720 < th dose independent rect. 11 12