Os01g0153400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Aspartyl-tRNA synthetase (EC 6.1.1.12) (Aspartate--tRNA ligase) (AspRS).
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Os01g0153400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Aspartyl-tRNA synthetase (EC 6.1.1.12) (Aspartate--tRNA ligase) (AspRS).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 36.23 | 0.283 | 12.3 | -0.148 | 1.04 | 0.947 | -0.259 | 0.275 | -0.159 | 19.5 | 23.04 | 16 | -- | -- |
| 36.29 | 0.281 | 12.3 | -0.111 | 1.04 | 0.918 | -0.24 | -- | -0.15 | 19.5 | 23.1 | 29 | -- | -- |
| 36.27 | 0.28 | 12.3 | -0.132 | 1.06 | 0.986 | -- | 0.311 | -0.16 | 19.6 | 22.82 | 96 | -- | -- |
| 36.41 | 0.281 | 12.3 | -0.101 | 1.05 | 0.927 | -- | -- | -0.154 | 19.6 | 23 | 91 | -- | -- |
| 93.09 | 0.452 | 12.3 | -0.134 | -- | 1.09 | -- | 0.32 | -0.154 | -- | 23.2 | 10 | -- | -- |
| 46.43 | 0.319 | 12.4 | -0.304 | 1.07 | -- | -0.176 | -- | -0.273 | 20 | -- | -- | -- | -- |
| 46.52 | 0.319 | 12.4 | -0.299 | 1.07 | -- | -- | -- | -0.273 | 20 | -- | -- | -- | -- |
| 93.25 | 0.452 | 12.3 | -0.0986 | -- | 1.05 | -- | -- | -0.147 | -- | 23.2 | 10 | -- | -- |
| 36.66 | 0.282 | 12.3 | -- | 1.06 | 0.97 | -- | -- | -0.142 | 19.6 | 23 | 95 | -- | -- |
| 108.83 | 0.487 | 12.3 | -0.309 | -- | -- | -- | -- | -0.287 | -- | -- | -- | -- | -- |
| 48.87 | 0.327 | 12.3 | -- | 1.07 | -- | -- | -- | -0.24 | 20 | -- | -- | -- | -- |
| 93.49 | 0.452 | 12.3 | -- | -- | 1.08 | -- | -- | -0.132 | -- | 23.2 | 8 | -- | -- |
| 111.35 | 0.493 | 12.3 | -- | -- | -- | -- | -- | -0.252 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 34.79 | temperature | 20.0 | 270 | > th | dose independent | rect. | 1 | 20 |
| 3 | 34.90 | temperature | 20.0 | 270 | > th | dose independent | rect. | 14 | 17 |
| 4 | 34.92 | temperature | 20.0 | 270 | > th | dose independent | rect. | 2 | 17 |
| 8 | 35.18 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 15 | 16 |
| 14 | 35.38 | temperature | 20.0 | 270 | > th | dose independent | rect. | 11 | 21 |
| 17 | 35.42 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 19 | 5 |
| 20 | 35.51 | temperature | 20.0 | 270 | > th | dose independent | rect. | 23 | 9 |
| 56 | 35.99 | temperature | 20.0 | 30 | > th | dose independent | sin | 6 | NA |
| 89 | 36.31 | temperature | 10.0 | 720 | > th | dose dependent | sin | 15 | NA |
| 92 | 36.33 | temperature | 20.0 | 30 | > th | dose independent | rect. | 17 | 16 |
| 93 | 36.33 | temperature | 10.0 | 10 | > th | dose dependent | sin | 10 | NA |
| 95 | 36.33 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 18 | 18 |
| 96 | 36.34 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 15 | 18 |
| 117 | 36.45 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 23 | 9 |
| 135 | 36.55 | temperature | 25.0 | 10 | < th | dose dependent | sin | 8 | NA |
| 153 | 36.64 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 16 | 9 |
| 155 | 36.65 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 1 | 8 |
| 168 | 36.70 | temperature | 30.0 | 10 | < th | dose dependent | sin | 10 | NA |
| 178 | 36.72 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 16 | 20 |
| 197 | 36.77 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 17 | 16 |
| 293 | 37.00 | temperature | 20.0 | 90 | < th | dose independent | rect. | 23 | 20 |
| 301 | 37.02 | temperature | 20.0 | 90 | < th | dose independent | rect. | 23 | 22 |
| 323 | 37.06 | temperature | 20.0 | 90 | < th | dose independent | rect. | 23 | 18 |
| 328 | 37.07 | temperature | 20.0 | 30 | < th | dose independent | sin | 5 | NA |
| 354 | 37.13 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 358 | 37.13 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 7 | 1 |
| 361 | 37.14 | temperature | 20.0 | 90 | < th | dose independent | rect. | 23 | 16 |
| 383 | 37.17 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 7 | 1 |
| 386 | 37.17 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 7 | 1 |
| 446 | 37.25 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 447 | 37.26 | temperature | 20.0 | 30 | > th | dose independent | no | NA | NA |
| 459 | 37.27 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 461 | 37.28 | temperature | 20.0 | 90 | < th | dose independent | rect. | 23 | 13 |
| 464 | 37.28 | temperature | 25.0 | 10 | < th | dose dependent | no | NA | NA |
| 467 | 37.28 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 471 | 37.29 | temperature | 25.0 | 720 | < th | dose dependent | sin | 17 | NA |
| 491 | 37.31 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 9 | 23 |
| 492 | 37.31 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 503 | 37.32 | temperature | 25.0 | 30 | < th | dose dependent | rect. | 5 | 23 |
| 508 | 37.33 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 7 | 23 |
| 516 | 37.34 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 19 | 14 |
| 551 | 37.38 | humidity | 50.0 | 14400 | < th | dose dependent | rect. | 11 | 2 |
| 600 | 37.43 | temperature | 20.0 | 30 | < th | dose independent | rect. | 14 | 23 |
| 615 | 37.44 | temperature | 20.0 | 90 | < th | dose independent | rect. | 17 | 23 |
| 626 | 37.45 | temperature | 20.0 | 30 | < th | dose independent | rect. | 1 | 23 |
| 636 | 37.45 | temperature | 25.0 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 637 | 37.46 | temperature | 20.0 | 90 | < th | dose independent | no | NA | NA |
| 695 | 37.51 | temperature | 20.0 | 30 | < th | dose independent | rect. | 9 | 23 |
| 707 | 37.52 | temperature | 20.0 | 30 | < th | dose independent | rect. | 11 | 23 |
| 711 | 37.52 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 19 | 13 |
| 721 | 37.53 | temperature | 20.0 | 30 | > th | dose independent | rect. | 15 | 23 |
| 722 | 37.53 | temperature | 20.0 | 30 | < th | dose independent | rect. | 7 | 23 |
| 741 | 37.55 | temperature | 20.0 | 30 | < th | dose independent | rect. | 3 | 23 |
| 742 | 37.55 | temperature | 20.0 | 30 | < th | dose independent | rect. | 5 | 23 |
| 759 | 37.57 | radiation | 20.0 | 14400 | > th | dose dependent | rect. | 6 | 1 |