Os01g0153000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein kinase-like domain containing protein.
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Os01g0153000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein kinase-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 33.25 | 0.271 | 3.06 | 0.0259 | 0.105 | -0.529 | -0.069 | 1.97 | 0.0481 | 7.88 | 50.27 | 7 | -- | -- |
| 34.9 | 0.275 | 3.06 | 0.0138 | 0.106 | -0.251 | -0.166 | -- | 0.0427 | 7.91 | 51.32 | 6 | -- | -- |
| 33.26 | 0.269 | 3.06 | 0.026 | 0.105 | -0.533 | -- | 2 | 0.0492 | 8.06 | 50.3 | 6 | -- | -- |
| 34.99 | 0.275 | 3.06 | 0.009 | 0.106 | -0.253 | -- | -- | 0.042 | 7.93 | 51.13 | 6 | -- | -- |
| 33.86 | 0.271 | 3.06 | 0.0257 | -- | -0.532 | -- | 2.01 | 0.0497 | -- | 50.34 | 6 | -- | -- |
| 35.67 | 0.28 | 3.06 | 0.0161 | 0.107 | -- | -0.182 | -- | 0.032 | 8.77 | -- | -- | -- | -- |
| 35.78 | 0.28 | 3.06 | 0.0102 | 0.107 | -- | -- | -- | 0.032 | 8.86 | -- | -- | -- | -- |
| 35.6 | 0.278 | 3.06 | 0.0101 | -- | -0.253 | -- | -- | 0.0434 | -- | 51.47 | 6 | -- | -- |
| 34.99 | 0.275 | 3.06 | -- | 0.106 | -0.253 | -- | -- | 0.0411 | 7.93 | 51.18 | 6 | -- | -- |
| 36.43 | 0.282 | 3.06 | 0.0102 | -- | -- | -- | -- | 0.0328 | -- | -- | -- | -- | -- |
| 35.79 | 0.28 | 3.06 | -- | 0.107 | -- | -- | -- | 0.0309 | 8.85 | -- | -- | -- | -- |
| 35.6 | 0.278 | 3.06 | -- | -- | -0.253 | -- | -- | 0.0423 | -- | 51.41 | 6 | -- | -- |
| 36.44 | 0.282 | 3.06 | -- | -- | -- | -- | -- | 0.0316 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 30.15 | humidity | 70 | 4320 | > th | dose independent | rect. | 21 | 1 |
| 2 | 30.17 | humidity | 70 | 4320 | > th | dose independent | rect. | 20 | 5 |
| 4 | 30.18 | humidity | 70 | 4320 | > th | dose independent | rect. | 20 | 8 |
| 8 | 30.20 | humidity | 70 | 4320 | > th | dose independent | rect. | 20 | 10 |
| 19 | 30.37 | humidity | 70 | 4320 | < th | dose independent | rect. | 20 | 1 |
| 30 | 30.37 | humidity | 70 | 4320 | < th | dose dependent | rect. | 20 | 1 |
| 40 | 30.38 | humidity | 50 | 4320 | > th | dose independent | rect. | 16 | 1 |
| 47 | 30.92 | wind | 9 | 4320 | > th | dose dependent | rect. | 14 | 1 |
| 52 | 31.31 | radiation | 1 | 720 | < th | dose independent | rect. | 8 | 1 |
| 54 | 31.31 | radiation | 1 | 720 | < th | dose dependent | rect. | 8 | 1 |
| 58 | 31.43 | atmosphere | 1010 | 10 | > th | dose dependent | rect. | 12 | 1 |
| 122 | 31.62 | wind | 9 | 4320 | > th | dose independent | rect. | 14 | 1 |
| 167 | 31.78 | atmosphere | 1010 | 30 | > th | dose dependent | sin | 23 | NA |
| 461 | 32.10 | wind | 9 | 4320 | < th | dose independent | rect. | 14 | 1 |
| 577 | 32.26 | humidity | 70 | 4320 | > th | dose independent | rect. | 4 | 3 |
| 594 | 32.32 | humidity | 50 | 10 | > th | dose independent | sin | 7 | NA |
| 608 | 32.43 | humidity | 60 | 4320 | > th | dose independent | rect. | 18 | 1 |
| 632 | 32.52 | humidity | 70 | 4320 | < th | dose independent | rect. | 6 | 1 |
| 642 | 32.52 | humidity | 70 | 4320 | < th | dose dependent | rect. | 6 | 1 |
| 667 | 32.58 | humidity | 70 | 4320 | < th | dose dependent | rect. | 19 | 14 |
| 690 | 32.71 | radiation | 20 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 745 | 32.71 | radiation | 20 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 811 | 32.77 | humidity | 50 | 4320 | < th | dose independent | rect. | 16 | 1 |
| 909 | 32.90 | radiation | 10 | 720 | > th | dose dependent | rect. | 6 | 1 |
| 947 | 32.95 | humidity | 90 | 4320 | < th | dose dependent | rect. | 4 | 5 |
| 966 | 33.00 | humidity | 50 | 4320 | > th | dose dependent | rect. | 4 | 5 |
| 984 | 33.06 | humidity | 50 | 4320 | > th | dose independent | rect. | 9 | 3 |
| 997 | 33.07 | radiation | 40 | 4320 | > th | dose dependent | rect. | 15 | 18 |