Os01g0152800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein kinase-like domain containing protein.
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Os01g0152800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein kinase-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 48.42 | 0.327 | 3.17 | 0.349 | 0.13 | -6.33 | -0.501 | 65.8 | -0.0697 | 1.82 | 34.32 | 62 | -- | -- |
| 50.45 | 0.333 | 3.22 | -0.106 | 0.133 | 4.58 | -0.513 | -- | -0.0691 | 1.82 | 34.32 | 62 | -- | -- |
| 47.26 | 0.32 | 3.16 | 0.352 | 0.098 | -6.96 | -- | 79.4 | -0.0814 | 1.69 | 34.55 | 59 | -- | -- |
| 48.31 | 0.326 | 3.22 | -0.0871 | 0.122 | 5.15 | -- | -- | -0.0698 | 2.02 | 34.55 | 59 | -- | -- |
| 47.41 | 0.321 | 3.16 | 0.397 | -- | -9.35 | -- | 98.4 | -0.0716 | -- | 34.59 | 59 | -- | -- |
| 73.1 | 0.401 | 3.23 | -0.0782 | 0.0798 | -- | -0.626 | -- | -0.0837 | 1.72 | -- | -- | -- | -- |
| 74.65 | 0.405 | 3.23 | -0.0582 | 0.0796 | -- | -- | -- | -0.0802 | 1.71 | -- | -- | -- | -- |
| 49.21 | 0.328 | 3.22 | -0.0817 | -- | 5.09 | -- | -- | -0.0671 | -- | 34.55 | 59 | -- | -- |
| 48.51 | 0.326 | 3.22 | -- | 0.121 | 5.14 | -- | -- | -0.0602 | 2 | 34.55 | 59 | -- | -- |
| 75.03 | 0.405 | 3.22 | -0.055 | -- | -- | -- | -- | -0.0784 | -- | -- | -- | -- | -- |
| 74.73 | 0.404 | 3.22 | -- | 0.0786 | -- | -- | -- | -0.0737 | 1.69 | -- | -- | -- | -- |
| 49.38 | 0.328 | 3.22 | -- | -- | 5.08 | -- | -- | -0.0581 | -- | 34.55 | 59 | -- | -- |
| 75.11 | 0.405 | 3.22 | -- | -- | -- | -- | -- | -0.0723 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 45.86 | atmosphere | 1000 | 90 | < th | dose dependent | rect. | 12 | 3 |
| 2 | 47.19 | atmosphere | 1000 | 90 | < th | dose independent | rect. | 12 | 1 |
| 3 | 47.23 | humidity | 50 | 90 | < th | dose independent | rect. | 13 | 1 |
| 4 | 47.23 | humidity | 50 | 90 | < th | dose dependent | rect. | 13 | 1 |
| 5 | 47.23 | atmosphere | 1000 | 90 | < th | dose dependent | rect. | 12 | 1 |
| 31 | 52.38 | atmosphere | 1000 | 270 | < th | dose independent | rect. | 10 | 4 |
| 54 | 54.22 | temperature | 30 | 90 | > th | dose dependent | rect. | 12 | 3 |
| 85 | 56.13 | temperature | 30 | 30 | > th | dose dependent | rect. | 13 | 21 |
| 193 | 57.84 | atmosphere | 1000 | 10 | < th | dose dependent | rect. | 8 | 8 |
| 197 | 58.06 | temperature | 30 | 270 | > th | dose dependent | rect. | 9 | 5 |
| 277 | 59.18 | temperature | 30 | 270 | > th | dose dependent | sin | 7 | NA |
| 281 | 59.28 | atmosphere | 1000 | 10 | < th | dose dependent | sin | 23 | NA |
| 469 | 61.57 | temperature | 30 | 90 | > th | dose dependent | sin | 23 | NA |
| 472 | 61.63 | atmosphere | 1000 | 720 | < th | dose independent | rect. | 4 | 9 |
| 520 | 61.85 | temperature | 30 | 30 | > th | dose dependent | sin | 17 | NA |
| 623 | 62.18 | temperature | 30 | 90 | > th | dose dependent | no | NA | NA |
| 736 | 62.28 | atmosphere | 1000 | 720 | > th | dose independent | rect. | 3 | 8 |
| 766 | 62.38 | atmosphere | 1000 | 10 | < th | dose dependent | rect. | 1 | 15 |
| 867 | 62.91 | temperature | 30 | 30 | > th | dose independent | rect. | 13 | 1 |