FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0152600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Serine/threonine protein kinase domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.27 (0.0215) R2 : 0.00245
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0479 (0.0452) R2dN8 : 0.00317 R2N8 : 0.00245
σ : 0.405
deviance : 75.19
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = precipitation, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
70.16 0.394 3.26 0.111 0.194 -0.22 -0.157 6.25 0.0605 7.65 0.4466 10 -- --
70.19 0.39 3.27 0.0982 0.187 1.56 -0.174 -- 0.0509 7.66 0.3825 4 -- --
70.23 0.39 3.26 0.105 0.194 -0.0167 -- 5.52 0.0611 7.7 0.4345 9 -- --
70.25 0.39 3.26 0.0956 0.191 1.58 -- -- 0.0615 7.71 0.3576 4 -- --
72.23 0.396 3.26 0.113 -- 0.00483 -- 5.6 0.0636 -- 0.6772 9 -- --
72.68 0.4 3.26 0.117 0.198 -- -0.138 -- 0.0576 7.51 -- -- -- --
72.73 0.399 3.26 0.114 0.198 -- -- -- 0.0577 7.48 -- -- -- --
72.21 0.396 3.27 0.0982 -- 1.62 -- -- 0.0642 -- 0.4144 4 -- --
70.49 0.391 3.26 -- 0.192 1.59 -- -- 0.0514 7.7 0.3182 4 -- --
74.83 0.404 3.27 0.117 -- -- -- -- 0.0609 -- -- -- -- --
73.07 0.4 3.27 -- 0.199 -- -- -- 0.0451 7.44 -- -- -- --
72.46 0.396 3.27 -- -- 1.64 -- -- 0.0536 -- 0.3847 4 -- --
75.19 0.405 3.27 -- -- -- -- -- 0.0479 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 64.78 precipitation 0.1 10 < th dose independent rect. 3 23
2 64.78 precipitation 0.1 10 < th dose dependent rect. 3 23
3 65.96 atmosphere 1010.0 30 < th dose dependent rect. 2 1
6 66.25 wind 5.0 10 < th dose dependent rect. 2 1
8 66.26 temperature 15.0 10 > th dose dependent rect. 2 1
9 66.27 wind 3.0 10 < th dose independent rect. 2 1
19 66.37 temperature 10.0 10 > th dose independent rect. 2 1
21 66.37 temperature 30.0 10 < th dose independent rect. 2 1
22 66.37 humidity 50.0 10 > th dose independent rect. 2 1
25 66.37 atmosphere 995.0 10 > th dose independent rect. 2 1
26 66.37 atmosphere 1010.0 10 < th dose independent rect. 2 1
28 66.37 radiation 1.0 10 < th dose independent rect. 2 1
33 66.37 precipitation 0.1 10 < th dose independent rect. 2 1
34 66.37 temperature 10.0 10 > th dose independent rect. 3 23
35 66.37 radiation 1.0 10 < th dose dependent rect. 2 1
40 66.37 precipitation 0.1 10 < th dose dependent rect. 2 1
45 66.38 humidity 50.0 10 > th dose dependent rect. 2 1
86 66.42 temperature 30.0 30 < th dose dependent rect. 2 1
88 66.45 atmosphere 1005.0 10 > th dose dependent rect. 2 1
96 66.54 atmosphere 995.0 30 > th dose dependent rect. 2 1
97 66.56 wind 1.0 30 > th dose independent rect. 2 1
99 66.61 atmosphere 1005.0 30 > th dose independent rect. 2 1
102 66.65 atmosphere 995.0 10 > th dose independent rect. 3 23
107 66.73 wind 9.0 30 < th dose independent rect. 3 23
116 67.17 wind 1.0 30 < th dose independent rect. 10 1
117 67.17 temperature 10.0 1440 > th dose independent rect. 11 1
121 67.17 atmosphere 995.0 1440 > th dose independent rect. 11 1
124 67.17 precipitation 0.1 1440 < th dose independent rect. 11 1
125 67.17 temperature 10.0 1440 > th dose independent rect. 12 23
128 67.17 wind 1.0 30 < th dose dependent rect. 10 1
129 67.17 precipitation 0.1 1440 < th dose dependent rect. 11 1
134 67.63 temperature 25.0 30 > th dose dependent rect. 10 1
135 67.64 humidity 70.0 30 < th dose independent rect. 10 1
136 67.67 atmosphere 1010.0 30 < th dose independent rect. 10 1
137 67.71 radiation 40.0 30 < th dose independent rect. 10 1
141 67.91 atmosphere 1005.0 30 > th dose independent rect. 10 1
145 67.96 humidity 70.0 30 < th dose dependent rect. 10 1
146 67.98 radiation 20.0 30 > th dose independent rect. 10 1
147 67.99 temperature 25.0 30 > th dose independent rect. 10 1
149 68.00 atmosphere 1000.0 30 > th dose dependent rect. 10 1
157 68.15 temperature 30.0 30 < th dose independent rect. 10 1
160 68.17 radiation 40.0 30 < th dose dependent rect. 10 1
163 68.18 wind 5.0 30 < th dose dependent rect. 10 1
171 68.23 humidity 60.0 30 > th dose independent rect. 10 1
174 68.26 temperature 10.0 30 > th dose independent rect. 10 1
177 68.26 humidity 90.0 30 < th dose independent rect. 10 1
181 68.26 precipitation 0.1 30 < th dose independent rect. 10 1
182 68.26 temperature 10.0 30 > th dose independent rect. 11 23
183 68.26 precipitation 0.1 30 < th dose dependent rect. 10 1
185 68.30 wind 1.0 30 > th dose independent rect. 10 1
191 68.56 radiation 1.0 30 > th dose dependent rect. 10 1
195 68.62 wind 9.0 30 < th dose independent rect. 11 23
197 68.68 humidity 50.0 30 > th dose dependent rect. 10 1
209 68.81 humidity 80.0 14400 < th dose dependent rect. 1 8
221 68.93 atmosphere 1015.0 30 < th dose dependent rect. 10 1
225 68.95 wind 1.0 30 > th dose dependent rect. 10 1
228 68.97 wind 9.0 4320 < th dose independent rect. 3 1
258 69.04 radiation 1.0 43200 < th dose dependent rect. 3 1
268 69.17 humidity 90.0 90 < th dose independent rect. 2 1
291 69.30 temperature 10.0 1440 > th dose independent rect. 3 1
294 69.30 temperature 30.0 1440 < th dose independent rect. 3 1
298 69.30 humidity 50.0 1440 > th dose independent rect. 3 1
307 69.30 atmosphere 995.0 1440 > th dose independent rect. 3 1
308 69.30 radiation 1.0 1440 < th dose independent rect. 3 1
328 69.30 temperature 10.0 1440 > th dose independent rect. 4 23
331 69.30 radiation 1.0 1440 < th dose dependent rect. 3 1
373 69.36 humidity 50.0 30 > th dose independent rect. 3 23
379 69.43 radiation 10.0 10 < th dose independent rect. 4 22
382 69.45 precipitation 0.1 10 < th dose independent rect. 23 23
383 69.45 precipitation 0.1 10 < th dose dependent rect. 23 23
389 69.51 atmosphere 995.0 720 > th dose independent rect. 23 16
405 69.63 radiation 20.0 10 < th dose dependent rect. 3 23
419 69.76 humidity 70.0 14400 > th dose independent rect. 8 1
429 69.84 wind 5.0 14400 < th dose dependent rect. 11 1
449 69.92 atmosphere 995.0 720 > th dose independent rect. 7 8
451 69.93 humidity 70.0 14400 < th dose independent rect. 8 2
463 69.93 wind 1.0 30 > th dose dependent rect. 2 1
467 69.94 humidity 70.0 14400 > th dose independent rect. 5 5
470 69.94 humidity 70.0 14400 > th dose independent rect. 1 9
474 69.95 wind 3.0 14400 > th dose independent rect. 10 2
475 69.95 humidity 70.0 14400 > th dose independent rect. 7 3
514 70.06 atmosphere 1000.0 30 > th dose independent rect. 4 15
530 70.10 wind 3.0 14400 > th dose independent rect. 19 1
531 70.10 wind 3.0 14400 < th dose independent rect. 19 1
532 70.10 wind 1.0 14400 > th dose dependent rect. 11 1
534 70.11 wind 3.0 10 > th dose independent rect. 4 1
537 70.11 wind 3.0 14400 < th dose independent rect. 10 2
538 70.11 wind 3.0 10 > th dose dependent rect. 4 1
545 70.13 precipitation 0.1 10 > th dose independent rect. 23 5
549 70.13 precipitation 0.1 30 > th dose dependent rect. 22 7
557 70.14 wind 5.0 14400 < th dose independent rect. 10 7
563 70.14 precipitation 0.1 10 > th dose dependent rect. 23 5
592 70.17 precipitation 0.1 30 > th dose dependent rect. 1 3
603 70.18 precipitation 0.1 30 > th dose independent rect. 1 5
608 70.18 wind 5.0 14400 > th dose independent rect. 10 7
613 70.18 precipitation 0.1 30 > th dose dependent rect. 3 1
629 70.19 precipitation 0.1 10 > th dose independent rect. 1 3
643 70.19 precipitation 0.1 10 > th dose dependent sin 8 NA
644 70.19 wind 1.0 14400 < th dose dependent rect. 6 1
656 70.20 precipitation 0.1 30 > th dose independent rect. 3 1
737 70.22 atmosphere 1015.0 720 < th dose independent rect. 3 8
743 70.22 humidity 70.0 4320 > th dose dependent rect. 3 7
748 70.23 precipitation 0.1 10 > th dose independent sin 7 NA
751 70.23 temperature 10.0 720 > th dose independent rect. 15 8
765 70.23 temperature 10.0 720 > th dose independent rect. 23 16
799 70.24 atmosphere 1015.0 30 < th dose independent rect. 3 23
807 70.24 wind 3.0 14400 > th dose dependent rect. 10 5
818 70.24 precipitation 0.1 10 > th dose dependent rect. 19 10
828 70.25 temperature 30.0 1440 > th dose independent rect. 14 21
868 70.25 precipitation 0.1 10 > th dose dependent rect. 22 22
872 70.26 humidity 80.0 14400 < th dose independent rect. 23 15
905 70.27 humidity 80.0 14400 < th dose independent rect. 24 13
939 70.27 humidity 50.0 30 > th dose dependent rect. 3 23
944 70.28 radiation 40.0 720 < th dose independent rect. 15 8
952 70.28 atmosphere 995.0 10 > th dose dependent rect. 4 22
953 70.29 precipitation 0.1 10 < th dose independent sin 5 NA
971 70.29 precipitation 0.1 90 < th dose independent rect. 3 12
986 70.29 precipitation 0.1 10 < th dose dependent sin 5 NA
996 70.29 precipitation 0.1 90 < th dose dependent rect. 3 12