Os01g0152000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein kinase-like domain containing protein.
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Os01g0152000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein kinase-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 296.11 | 0.808 | 6.12 | -0.124 | 1.88 | 2.03 | 1.22 | -2.27 | -0.0496 | 22.4 | 20.7 | 5205 | -- | -- |
| 285.61 | 0.787 | 6.08 | -1.05 | 1.86 | 3.05 | 0.999 | -- | -0.179 | 22.3 | 18.91 | 21407 | -- | -- |
| 302.1 | 0.81 | 6.11 | -0.151 | 1.88 | 2.04 | -- | -2.15 | -0.0517 | 22.4 | 20.73 | 5178 | -- | -- |
| 289.9 | 0.793 | 6.08 | -1.15 | 1.91 | 3.11 | -- | -- | -0.207 | 22.4 | 18.9 | 21583 | -- | -- |
| 515.43 | 1.06 | 6.09 | -0.127 | -- | 2.12 | -- | -2.2 | -0.0872 | -- | 20.9 | 3806 | -- | -- |
| 407.68 | 0.947 | 5.86 | 1.8 | 1.95 | -- | 1.18 | -- | 0.771 | 22.5 | -- | -- | -- | -- |
| 413.38 | 0.952 | 5.86 | 1.75 | 1.94 | -- | -- | -- | 0.768 | 22.5 | -- | -- | -- | -- |
| 508.58 | 1.05 | 6.08 | -1.24 | -- | 3.3 | -- | -- | -0.297 | -- | 18.9 | 21135 | -- | -- |
| 305.33 | 0.814 | 6.07 | -- | 1.91 | 2.6 | -- | -- | 0.0265 | 22.3 | 17.8 | 22340 | -- | -- |
| 645.01 | 1.19 | 5.81 | 1.79 | -- | -- | -- | -- | 0.776 | -- | -- | -- | -- | -- |
| 494.49 | 1.04 | 5.9 | -- | 1.95 | -- | -- | -- | 0.573 | 22.6 | -- | -- | -- | -- |
| 523.17 | 1.07 | 5.94 | -- | -- | 2.48 | -- | -- | 0.0554 | -- | 18.9 | 21068 | -- | -- |
| 729.39 | 1.26 | 5.85 | -- | -- | -- | -- | -- | 0.578 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 263.42 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 5 | 2 |
| 4 | 268.74 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 2 | 15 |
| 15 | 270.25 | humidity | 90.0 | 14400 | > th | dose dependent | sin | 3 | NA |
| 31 | 271.31 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 4 | 9 |
| 108 | 278.22 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 23 | 17 |
| 112 | 278.46 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 18 | 11 |
| 117 | 278.57 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 10 | 21 |
| 147 | 279.89 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 5 | 2 |
| 159 | 280.12 | humidity | 90.0 | 14400 | > th | dose dependent | no | NA | NA |
| 160 | 280.14 | wind | 3.0 | 43200 | < th | dose independent | rect. | 8 | 1 |
| 167 | 280.35 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 13 | 23 |
| 201 | 281.19 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 5 | 23 |
| 247 | 282.58 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 18 | 14 |
| 248 | 282.61 | wind | 3.0 | 43200 | > th | dose independent | rect. | 8 | 1 |
| 249 | 282.65 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 18 | 11 |
| 263 | 283.02 | humidity | 90.0 | 14400 | > th | dose independent | sin | 5 | NA |
| 267 | 283.23 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 314 | 284.33 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 23 | 18 |
| 363 | 285.65 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 18 | 7 |
| 372 | 285.80 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 18 | 2 |
| 379 | 285.83 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 23 | 2 |
| 384 | 285.96 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 22 | 7 |
| 386 | 286.04 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 18 | 14 |
| 393 | 286.18 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 19 | 10 |
| 408 | 286.64 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 10 | 21 |
| 410 | 286.71 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 6 | 2 |
| 411 | 286.76 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 6 | 2 |
| 418 | 286.96 | temperature | 20.0 | 14400 | > th | dose independent | rect. | 21 | 1 |
| 424 | 287.13 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 22 | 5 |
| 428 | 287.28 | temperature | 20.0 | 14400 | < th | dose independent | rect. | 20 | 3 |
| 432 | 287.32 | wind | 3.0 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 438 | 287.49 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 18 | 16 |
| 456 | 287.79 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 4 | 4 |
| 468 | 287.83 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 18 | 18 |
| 473 | 287.89 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 22 | 10 |
| 482 | 287.97 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 3 | 2 |
| 484 | 287.99 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 4 | 4 |
| 571 | 289.35 | radiation | 1.0 | 14400 | > th | dose independent | sin | 8 | NA |
| 630 | 289.72 | radiation | 1.0 | 14400 | < th | dose independent | sin | 7 | NA |
| 743 | 290.35 | humidity | 90.0 | 14400 | < th | dose independent | sin | 6 | NA |
| 760 | 290.46 | radiation | 40.0 | 14400 | < th | dose dependent | rect. | 18 | 7 |
| 772 | 290.58 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 3 | 4 |
| 773 | 290.58 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 3 | 4 |
| 791 | 290.65 | wind | 9.0 | 43200 | > th | dose independent | rect. | 16 | 1 |
| 816 | 290.78 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 3 | 5 |
| 823 | 290.81 | temperature | 20.0 | 14400 | < th | dose independent | sin | 15 | NA |
| 850 | 290.91 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 11 | 20 |
| 878 | 291.04 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 3 | 4 |
| 902 | 291.15 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 22 | 3 |
| 923 | 291.25 | temperature | 20.0 | 14400 | > th | dose independent | sin | 15 | NA |
| 925 | 291.25 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 22 | 5 |
| 963 | 291.43 | humidity | 90.0 | 14400 | > th | dose independent | no | NA | NA |
| 975 | 291.51 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 14 | 23 |