Os01g0151900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein prenyltransferase domain containing protein.
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Os01g0151900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein prenyltransferase domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 151.72 | 0.579 | 7.16 | 1.84 | 3.48 | 0.838 | -0.0946 | -2.47 | 0.222 | 19.1 | 88 | 839 | -- | -- |
| 163.63 | 0.596 | 7.14 | 1.65 | 3.46 | 0.894 | 0.808 | -- | 0.227 | 19.1 | 87.95 | 830 | -- | -- |
| 151.74 | 0.574 | 7.16 | 1.84 | 3.48 | 0.84 | -- | -2.45 | 0.223 | 19.1 | 88 | 838 | -- | -- |
| 165.47 | 0.599 | 7.15 | 1.58 | 3.5 | 0.865 | -- | -- | 0.185 | 19.1 | 86.3 | 856 | -- | -- |
| 705.87 | 1.24 | 7.07 | 1.9 | -- | 1.43 | -- | -3.79 | 0.197 | -- | 75 | 1339 | -- | -- |
| 176.13 | 0.622 | 7.17 | 1.69 | 3.28 | -- | 0.676 | -- | 0.048 | 18.9 | -- | -- | -- | -- |
| 177.3 | 0.624 | 7.17 | 1.68 | 3.29 | -- | -- | -- | 0.0499 | 18.9 | -- | -- | -- | -- |
| 714.52 | 1.25 | 7.12 | 1.65 | -- | -0.677 | -- | -- | -0.0831 | -- | 75 | 1339 | -- | -- |
| 228.48 | 0.704 | 7.16 | -- | 3.31 | 1.11 | -- | -- | 0.0916 | 18.9 | 86.42 | 1538 | -- | -- |
| 743.39 | 1.27 | 7.1 | 1.61 | -- | -- | -- | -- | -0.0125 | -- | -- | -- | -- | -- |
| 251.64 | 0.742 | 7.21 | -- | 3.27 | -- | -- | -- | -0.137 | 18.9 | -- | -- | -- | -- |
| 742.1 | 1.27 | 7.18 | -- | -- | -1.85 | -- | -- | -0.386 | -- | 64 | 2037 | -- | -- |
| 811.7 | 1.33 | 7.14 | -- | -- | -- | -- | -- | -0.191 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 139.12 | temperature | 30 | 90 | < th | dose dependent | rect. | 23 | 7 |
| 2 | 139.61 | temperature | 10 | 270 | > th | dose dependent | rect. | 18 | 14 |
| 30 | 145.92 | temperature | 15 | 10 | > th | dose dependent | rect. | 21 | 12 |
| 38 | 146.33 | temperature | 15 | 720 | > th | dose dependent | rect. | 20 | 5 |
| 46 | 147.02 | temperature | 15 | 30 | > th | dose dependent | sin | 9 | NA |
| 55 | 147.69 | humidity | 90 | 720 | > th | dose dependent | rect. | 10 | 17 |
| 67 | 147.99 | temperature | 30 | 1440 | < th | dose dependent | rect. | 13 | 2 |
| 74 | 148.24 | humidity | 90 | 720 | > th | dose dependent | sin | 17 | NA |
| 75 | 148.25 | humidity | 90 | 720 | < th | dose independent | rect. | 21 | 1 |
| 113 | 149.10 | temperature | 10 | 1440 | > th | dose dependent | rect. | 12 | 3 |
| 120 | 149.18 | temperature | 15 | 720 | > th | dose dependent | rect. | 21 | 1 |
| 202 | 150.16 | radiation | 40 | 90 | < th | dose independent | rect. | 6 | 17 |
| 237 | 150.53 | humidity | 90 | 720 | > th | dose dependent | rect. | 22 | 3 |
| 257 | 150.82 | temperature | 30 | 10 | < th | dose dependent | sin | 8 | NA |
| 291 | 151.13 | temperature | 15 | 270 | > th | dose independent | rect. | 17 | 15 |
| 301 | 151.19 | humidity | 90 | 720 | < th | dose independent | rect. | 20 | 4 |
| 304 | 151.21 | radiation | 10 | 90 | > th | dose independent | rect. | 6 | 2 |
| 353 | 151.48 | temperature | 15 | 720 | > th | dose dependent | sin | 14 | NA |
| 364 | 151.57 | temperature | 20 | 90 | > th | dose independent | rect. | 19 | 14 |
| 394 | 151.72 | humidity | 80 | 1440 | > th | dose dependent | rect. | 11 | 2 |
| 398 | 151.74 | humidity | 90 | 90 | < th | dose independent | rect. | 7 | 1 |
| 462 | 152.08 | temperature | 25 | 720 | < th | dose dependent | rect. | 12 | 19 |
| 493 | 152.19 | radiation | 30 | 90 | < th | dose independent | rect. | 6 | 5 |
| 496 | 152.20 | humidity | 90 | 10 | < th | dose independent | rect. | 7 | 2 |
| 525 | 152.31 | humidity | 90 | 720 | > th | dose independent | rect. | 10 | 16 |
| 530 | 152.32 | temperature | 15 | 720 | > th | dose dependent | rect. | 14 | 13 |
| 540 | 152.35 | humidity | 90 | 10 | < th | dose dependent | rect. | 6 | 3 |
| 558 | 152.41 | temperature | 30 | 1440 | < th | dose dependent | sin | 21 | NA |
| 580 | 152.48 | humidity | 90 | 90 | < th | dose independent | rect. | 17 | 16 |
| 601 | 152.53 | humidity | 80 | 1440 | > th | dose dependent | rect. | 10 | 8 |
| 611 | 152.55 | humidity | 90 | 720 | < th | dose independent | rect. | 10 | 15 |
| 641 | 152.64 | radiation | 1 | 30 | > th | dose dependent | rect. | 5 | 4 |
| 661 | 152.66 | temperature | 10 | 1440 | > th | dose dependent | sin | 21 | NA |
| 681 | 152.70 | humidity | 90 | 720 | < th | dose independent | rect. | 6 | 19 |
| 698 | 152.72 | humidity | 70 | 1440 | > th | dose dependent | rect. | 20 | 21 |
| 738 | 152.81 | humidity | 90 | 720 | > th | dose independent | rect. | 21 | 4 |
| 756 | 152.84 | humidity | 90 | 90 | < th | dose independent | rect. | 19 | 14 |
| 780 | 152.89 | temperature | 25 | 720 | < th | dose dependent | sin | 14 | NA |
| 832 | 152.99 | temperature | 15 | 4320 | > th | dose independent | rect. | 7 | 3 |
| 867 | 153.06 | humidity | 90 | 720 | > th | dose independent | rect. | 23 | 1 |
| 924 | 153.17 | humidity | 90 | 720 | > th | dose independent | rect. | 5 | 20 |
| 981 | 153.25 | atmosphere | 1010 | 270 | < th | dose independent | rect. | 17 | 16 |
| 990 | 153.26 | humidity | 90 | 90 | < th | dose independent | rect. | 6 | 3 |
| 991 | 153.26 | temperature | 15 | 1440 | > th | dose independent | rect. | 7 | 17 |