Os01g0150900 - FiT-DB

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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0150900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.

log2(Expression) ~ Norm(μ, σ²)

μ = α + β₁D + β₂C + β₃E + β₄D*C + β₅D*E + γ₁N8

par.		value	(S.E.)
α	:	6.01	(0.038)	R²	:	0.731
β₁	:	-1.91	(0.146)	R²_dD	:	0.123	R²_D	:	-0.0104
β₂	:	2.54	(0.0993)	R²_dC	:	0.461	R²_C	:	0.0837
β₃	:	-4.94	(0.186)	R²_dE	:	0.637	R²_E	:	0.138
β₄	:	--	(--)	R²_dD*C	:	--	R²_D*C	:	--
β₅	:	--	(--)	R²_dD*E	:	--	R²_D*E	:	--
γ₁	:	0.0989	(0.0884)	R²_dN8	:	0.00133	R²_N8	:	0.0193
σ	:	0.694
deviance	:	221.84
__

_____

C
peak time of C	:	9.4
E
wheather	:	temperature
threshold	:	28.46
memory length	:	780
response mode	:	< th
dose dependency	:	dose dependent
G
type of G	:	no
peak or start time of G	:	--
open length of G	:	--

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance	σ	α	β₁	β₂	β₃	β₄	β₅	γ₁	peak time of C	threshold	memory length	peak or start time of G	open length of G
215.85	0.69	5.96	-1.5	2.52	-5.01	-0.186	-2.18	0.179	9.41	27.82	770	--	--
220.48	0.692	6.01	-1.88	2.59	-4.95	-0.633	--	0.111	9.16	28.37	725	--	--
215.94	0.684	5.96	-1.49	2.51	-5.01	--	-2.32	0.182	9.44	27.77	777	--	--
221.84	0.694	6.01	-1.91	2.54	-4.94	--	--	0.0989	9.4	28.46	780	--	--
380.74	0.909	6.01	-1.47	--	-4.67	--	-2.35	0.242	--	27.97	1480	--	--
567.16	1.12	5.8	-0.501	1.5	--	-0.836	--	1.14	9.21	--	--	--	--
569.61	1.12	5.8	-0.53	1.5	--	--	--	1.14	9.27	--	--	--	--
380.45	0.908	6.05	-1.88	--	-4.25	--	--	0.273	--	31.1	1479	--	--
306.14	0.815	5.92	--	2.47	-4.17	--	--	0.466	8.77	29.17	611	--	--
700.41	1.24	5.84	-0.536	--	--	--	--	1.15	--	--	--	--	--
577.02	1.12	5.79	--	1.5	--	--	--	1.2	9.3	--	--	--	--
465.86	1.01	5.97	--	--	-3.52	--	--	0.629	--	32.1	1469	--	--
708	1.24	5.83	--	--	--	--	--	1.21	--	--	--	--	--

Results of the grid search

Summarized heatmap of deviance

Histogram

Local optima within top1000 grid-points

rank	deviance	wheather	threshold	memory length	response mode	dose dependency	type of G	peak or start time of G	open length of G
1	205.77	temperature	30	720	< th	dose dependent	rect.	16	19
19	213.23	temperature	15	720	> th	dose dependent	rect.	18	21
44	218.72	temperature	30	720	< th	dose dependent	rect.	22	23
50	219.66	temperature	10	720	> th	dose dependent	rect.	18	15
56	220.47	temperature	30	720	< th	dose dependent	no	NA	NA
66	222.28	temperature	30	720	< th	dose dependent	rect.	7	23
67	222.42	temperature	30	720	< th	dose dependent	rect.	24	23
72	222.75	temperature	10	1440	> th	dose dependent	rect.	20	1
73	222.77	temperature	20	1440	> th	dose dependent	rect.	20	1
75	222.83	temperature	30	1440	< th	dose dependent	rect.	20	1
78	222.95	temperature	30	720	< th	dose dependent	rect.	5	23
89	223.81	temperature	30	1440	< th	dose dependent	rect.	18	6
93	223.89	temperature	30	1440	< th	dose dependent	rect.	17	12
96	224.07	temperature	10	1440	> th	dose dependent	rect.	18	7
98	224.18	temperature	15	1440	> th	dose dependent	rect.	17	13
108	224.32	temperature	30	1440	< th	dose dependent	rect.	17	9
226	226.84	temperature	10	720	> th	dose dependent	rect.	11	22
237	227.15	temperature	30	1440	< th	dose dependent	sin	13	NA
239	227.21	temperature	15	1440	> th	dose dependent	sin	12	NA
271	227.80	temperature	10	720	> th	dose dependent	sin	10	NA
600	233.35	temperature	10	720	> th	dose dependent	rect.	2	23
633	233.97	temperature	15	720	> th	dose dependent	no	NA	NA