Os01g0149500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Resistance gene analog PIC23 (Fragment).
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Os01g0149500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Resistance gene analog PIC23 (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 176.99 | 0.625 | 3.05 | 1.25 | 0.8 | -1.54 | 1.06 | 20.1 | 0.174 | 19.1 | 30.8 | 258 | -- | -- |
| 181.56 | 0.632 | 3.17 | 0.277 | 0.879 | 0.806 | 1.25 | -- | 0.162 | 19.1 | 30.8 | 258 | -- | -- |
| 179.09 | 0.623 | 3.06 | 1.1 | 0.811 | -1.61 | -- | 22.1 | 0.173 | 19 | 32.48 | 256 | -- | -- |
| 183.04 | 0.63 | 3.16 | 0.215 | 0.76 | 0.726 | -- | -- | 0.173 | 19.1 | 29.15 | 258 | -- | -- |
| 207 | 0.67 | 2.99 | 1.45 | -- | -1.27 | -- | 22.2 | 0.201 | -- | 30.9 | 368 | -- | -- |
| 186.1 | 0.64 | 3.17 | 0.312 | 0.927 | -- | 1.37 | -- | 0.138 | 18.8 | -- | -- | -- | -- |
| 190.9 | 0.647 | 3.17 | 0.289 | 0.931 | -- | -- | -- | 0.142 | 18.8 | -- | -- | -- | -- |
| 194.28 | 0.649 | 3.17 | 0.0791 | -- | 1.19 | -- | -- | 0.0346 | -- | 25 | 477 | -- | -- |
| 182.02 | 0.628 | 3.18 | -- | 0.624 | 0.775 | -- | -- | 0.086 | 19.4 | 25.77 | 450 | -- | -- |
| 236.25 | 0.718 | 3.15 | 0.268 | -- | -- | -- | -- | 0.124 | -- | -- | -- | -- | -- |
| 193.1 | 0.65 | 3.18 | -- | 0.928 | -- | -- | -- | 0.11 | 18.8 | -- | -- | -- | -- |
| 194.37 | 0.649 | 3.17 | -- | -- | 1.22 | -- | -- | 0.0336 | -- | 25.04 | 477 | -- | -- |
| 238.16 | 0.72 | 3.16 | -- | -- | -- | -- | -- | 0.0943 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 168.99 | atmosphere | 1015 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 2 | 169.09 | atmosphere | 1015 | 1440 | < th | dose independent | rect. | 9 | 3 |
| 4 | 169.18 | atmosphere | 1015 | 1440 | > th | dose independent | rect. | 10 | 1 |
| 19 | 169.18 | atmosphere | 1015 | 1440 | > th | dose dependent | rect. | 10 | 1 |
| 38 | 169.55 | atmosphere | 1015 | 1440 | < th | dose independent | rect. | 5 | 7 |
| 46 | 172.24 | temperature | 25 | 90 | > th | dose independent | rect. | 14 | 8 |
| 47 | 172.31 | temperature | 25 | 10 | > th | dose independent | rect. | 14 | 8 |
| 54 | 173.45 | temperature | 20 | 10 | > th | dose dependent | rect. | 14 | 8 |
| 55 | 173.54 | temperature | 20 | 90 | > th | dose dependent | rect. | 14 | 8 |
| 61 | 173.84 | atmosphere | 995 | 10 | > th | dose independent | rect. | 21 | 23 |
| 76 | 174.42 | temperature | 25 | 90 | > th | dose dependent | rect. | 13 | 19 |
| 81 | 174.58 | temperature | 25 | 10 | > th | dose dependent | rect. | 14 | 18 |
| 89 | 174.89 | temperature | 30 | 270 | < th | dose independent | rect. | 8 | 7 |
| 125 | 175.31 | humidity | 60 | 10 | < th | dose independent | rect. | 14 | 2 |
| 128 | 175.35 | temperature | 20 | 10 | > th | dose dependent | rect. | 14 | 11 |
| 135 | 175.42 | temperature | 30 | 270 | < th | dose independent | rect. | 21 | 17 |
| 139 | 175.46 | temperature | 25 | 30 | > th | dose independent | rect. | 14 | 18 |
| 145 | 175.52 | humidity | 60 | 90 | < th | dose dependent | rect. | 12 | 4 |
| 159 | 175.64 | wind | 7 | 90 | > th | dose independent | rect. | 8 | 1 |
| 160 | 175.64 | wind | 7 | 90 | > th | dose dependent | rect. | 8 | 1 |
| 161 | 175.65 | temperature | 30 | 270 | < th | dose independent | rect. | 8 | 19 |
| 179 | 175.74 | temperature | 25 | 10 | > th | dose dependent | sin | 13 | NA |
| 200 | 175.85 | humidity | 60 | 90 | > th | dose independent | rect. | 10 | 17 |
| 234 | 175.99 | temperature | 30 | 90 | < th | dose independent | rect. | 10 | 17 |
| 247 | 176.04 | atmosphere | 1000 | 90 | < th | dose dependent | rect. | 13 | 4 |
| 264 | 176.09 | wind | 7 | 270 | < th | dose independent | rect. | 12 | 9 |
| 269 | 176.11 | temperature | 10 | 90 | > th | dose dependent | rect. | 5 | 16 |
| 283 | 176.20 | atmosphere | 995 | 30 | > th | dose independent | sin | 5 | NA |
| 285 | 176.20 | temperature | 30 | 10 | > th | dose dependent | rect. | 16 | 1 |
| 288 | 176.21 | atmosphere | 995 | 90 | > th | dose independent | sin | 7 | NA |
| 289 | 176.21 | humidity | 60 | 90 | < th | dose independent | rect. | 12 | 21 |
| 297 | 176.25 | temperature | 30 | 270 | < th | dose independent | rect. | 19 | 21 |
| 301 | 176.26 | radiation | 1 | 10 | > th | dose independent | rect. | 14 | 20 |
| 314 | 176.31 | atmosphere | 1000 | 10 | < th | dose dependent | rect. | 14 | 2 |
| 331 | 176.36 | temperature | 30 | 270 | < th | dose independent | rect. | 7 | 22 |
| 356 | 176.42 | atmosphere | 1000 | 90 | < th | dose dependent | rect. | 14 | 1 |
| 374 | 176.52 | humidity | 60 | 90 | < th | dose independent | rect. | 12 | 6 |
| 398 | 176.56 | humidity | 70 | 10 | < th | dose independent | rect. | 7 | 1 |
| 401 | 176.56 | atmosphere | 1000 | 90 | < th | dose independent | rect. | 6 | 1 |
| 402 | 176.56 | atmosphere | 1000 | 10 | < th | dose independent | rect. | 7 | 1 |
| 469 | 176.56 | humidity | 70 | 10 | < th | dose dependent | rect. | 7 | 1 |
| 472 | 176.56 | atmosphere | 1000 | 90 | < th | dose dependent | rect. | 6 | 1 |
| 473 | 176.56 | atmosphere | 1000 | 10 | < th | dose dependent | rect. | 7 | 1 |
| 542 | 176.57 | wind | 1 | 10 | < th | dose dependent | rect. | 7 | 1 |
| 551 | 176.60 | wind | 1 | 10 | < th | dose independent | rect. | 7 | 1 |
| 571 | 176.63 | atmosphere | 1000 | 10 | < th | dose dependent | rect. | 16 | 1 |
| 580 | 176.64 | humidity | 90 | 30 | < th | dose dependent | rect. | 14 | 20 |
| 617 | 176.71 | temperature | 30 | 720 | > th | dose independent | rect. | 13 | 1 |
| 635 | 176.79 | wind | 7 | 270 | < th | dose independent | rect. | 11 | 22 |
| 687 | 176.95 | temperature | 30 | 270 | < th | dose independent | rect. | 10 | 1 |
| 734 | 177.04 | wind | 7 | 270 | < th | dose independent | rect. | 13 | 19 |
| 752 | 177.09 | atmosphere | 1000 | 10 | > th | dose independent | rect. | 10 | 6 |
| 762 | 177.13 | radiation | 40 | 720 | > th | dose independent | rect. | 12 | 22 |
| 786 | 177.17 | radiation | 20 | 90 | > th | dose dependent | rect. | 15 | 2 |
| 811 | 177.20 | humidity | 60 | 270 | > th | dose independent | rect. | 8 | 19 |
| 822 | 177.23 | radiation | 1 | 90 | > th | dose dependent | sin | 12 | NA |
| 838 | 177.27 | atmosphere | 995 | 30 | > th | dose independent | rect. | 10 | 17 |
| 852 | 177.30 | atmosphere | 995 | 30 | > th | dose dependent | rect. | 10 | 6 |
| 872 | 177.33 | humidity | 80 | 90 | < th | dose dependent | rect. | 14 | 5 |
| 877 | 177.34 | radiation | 40 | 720 | < th | dose independent | rect. | 8 | 11 |
| 882 | 177.35 | humidity | 90 | 90 | < th | dose independent | rect. | 14 | 7 |
| 889 | 177.35 | radiation | 1 | 30 | > th | dose dependent | rect. | 15 | 17 |
| 907 | 177.39 | radiation | 40 | 720 | < th | dose independent | rect. | 7 | 13 |
| 933 | 177.43 | radiation | 1 | 270 | > th | dose dependent | rect. | 13 | 19 |
| 948 | 177.46 | temperature | 25 | 10 | < th | dose independent | rect. | 11 | 16 |
| 954 | 177.48 | radiation | 40 | 720 | < th | dose independent | rect. | 1 | 19 |
| 956 | 177.48 | atmosphere | 1000 | 90 | < th | dose dependent | rect. | 6 | 11 |
| 963 | 177.50 | atmosphere | 1000 | 270 | < th | dose independent | rect. | 11 | 4 |
| 969 | 177.51 | temperature | 30 | 90 | < th | dose independent | rect. | 10 | 9 |
| 980 | 177.55 | radiation | 40 | 720 | < th | dose independent | rect. | 10 | 9 |
| 994 | 177.58 | humidity | 70 | 90 | < th | dose dependent | rect. | 13 | 7 |