Os01g0148400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Brix domain containing protein.
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Os01g0148400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Brix domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 15.5 | 0.185 | 12.4 | -0.0743 | 1.1 | -0.402 | -0.257 | 0.582 | 0.00293 | 18 | 22 | 900 | -- | -- |
| 17.09 | 0.193 | 12.4 | -0.138 | 1.11 | -0.42 | -0.415 | -- | 0.00155 | 17.9 | 21.99 | 933 | -- | -- |
| 15.65 | 0.184 | 12.4 | -0.0729 | 1.1 | -0.409 | -- | 0.558 | 0.00402 | 18.1 | 22.05 | 917 | -- | -- |
| 16.22 | 0.188 | 12.4 | -0.209 | 1.11 | -0.479 | -- | -- | -0.0449 | 18.1 | 21.21 | 856 | -- | -- |
| 76.17 | 0.406 | 12.4 | -0.0713 | -- | -0.45 | -- | 0.442 | 0.00789 | -- | 22.35 | 2709 | -- | -- |
| 23.3 | 0.226 | 12.5 | -0.396 | 1.08 | -- | -0.244 | -- | -0.172 | 17.8 | -- | -- | -- | -- |
| 23.43 | 0.227 | 12.5 | -0.395 | 1.08 | -- | -- | -- | -0.173 | 17.8 | -- | -- | -- | -- |
| 76.47 | 0.407 | 12.4 | -0.214 | -- | -0.467 | -- | -- | -0.0185 | -- | 22 | 2728 | -- | -- |
| 17.28 | 0.194 | 12.4 | -- | 1.1 | -0.533 | -- | -- | -0.0083 | 18.1 | 21.2 | 954 | -- | -- |
| 83.77 | 0.428 | 12.5 | -0.428 | -- | -- | -- | -- | -0.199 | -- | -- | -- | -- | -- |
| 27.55 | 0.246 | 12.5 | -- | 1.08 | -- | -- | -- | -0.129 | 17.8 | -- | -- | -- | -- |
| 77.13 | 0.409 | 12.4 | -- | -- | -0.578 | -- | -- | 0.00277 | -- | 21.5 | 2729 | -- | -- |
| 88.6 | 0.439 | 12.4 | -- | -- | -- | -- | -- | -0.151 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 13.04 | temperature | 30 | 720 | < th | dose dependent | rect. | 22 | 11 |
| 10 | 13.23 | temperature | 30 | 720 | < th | dose dependent | sin | 7 | NA |
| 13 | 13.31 | temperature | 30 | 720 | < th | dose dependent | rect. | 2 | 7 |
| 20 | 13.38 | temperature | 25 | 720 | < th | dose dependent | rect. | 3 | 4 |
| 31 | 13.45 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 7 |
| 118 | 13.87 | temperature | 25 | 720 | < th | dose dependent | rect. | 1 | 13 |
| 119 | 13.88 | temperature | 10 | 720 | > th | dose dependent | sin | 8 | NA |
| 186 | 14.18 | temperature | 10 | 720 | > th | dose dependent | rect. | 20 | 15 |
| 203 | 14.26 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 12 |
| 227 | 14.32 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 14 |
| 342 | 14.83 | temperature | 20 | 720 | < th | dose independent | rect. | 3 | 4 |
| 347 | 14.84 | temperature | 25 | 270 | < th | dose independent | rect. | 6 | 7 |
| 384 | 14.95 | temperature | 30 | 270 | < th | dose dependent | rect. | 6 | 9 |
| 397 | 14.99 | temperature | 15 | 90 | > th | dose dependent | rect. | 4 | 18 |
| 426 | 15.10 | temperature | 20 | 720 | < th | dose independent | rect. | 1 | 13 |
| 432 | 15.11 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 12 |
| 444 | 15.13 | temperature | 20 | 720 | > th | dose independent | rect. | 2 | 9 |
| 451 | 15.14 | temperature | 20 | 720 | < th | dose independent | sin | 6 | NA |
| 559 | 15.35 | temperature | 20 | 720 | > th | dose independent | sin | 5 | NA |
| 657 | 15.53 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 6 |
| 879 | 15.94 | temperature | 20 | 270 | > th | dose independent | rect. | 3 | 16 |
| 910 | 15.99 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |
| 950 | 16.08 | temperature | 25 | 270 | < th | dose independent | rect. | 9 | 1 |