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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0147800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF547 domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.33 (0.0399) R2 : 0.0335
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.334 (0.0841) R2dN8 : 0.0433 R2N8 : 0.0335
σ : 0.752
deviance : 259.71
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
232.37 0.716 3.52 -1.96 0.373 0.841 -0.754 -5.14 -0.0687 16.6 25.7 1438 -- --
240.54 0.722 3.37 -0.588 0.394 0.635 -0.689 -- 0.191 15.9 14.93 1019 -- --
233.71 0.712 3.51 -1.91 0.341 0.881 -- -5.28 -0.0534 16.5 25.8 1519 -- --
241.68 0.724 3.36 -0.595 0.403 0.628 -- -- 0.192 15.7 13.15 1020 -- --
238.88 0.72 3.5 -1.77 -- 0.902 -- -5.2 -0.0265 -- 25.7 1741 -- --
246.14 0.736 3.34 -0.412 0.375 -- -0.748 -- 0.3 16.8 -- -- -- --
247.59 0.737 3.34 -0.415 0.37 -- -- -- 0.296 16.7 -- -- -- --
247.8 0.733 3.36 -0.583 -- 0.677 -- -- 0.189 -- 1.674 542 -- --
249.28 0.735 3.34 -- 0.411 0.279 -- -- 0.294 16.4 22.3 1264 -- --
254.85 0.746 3.34 -0.429 -- -- -- -- 0.287 -- -- -- -- --
252.13 0.743 3.33 -- 0.377 -- -- -- 0.343 16.6 -- -- -- --
256.02 0.745 3.34 -- -- 0.469 -- -- 0.278 -- 9.812 510 -- --
259.71 0.752 3.33 -- -- -- -- -- 0.334 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 224.16 temperature 25 1440 > th dose dependent rect. 18 1
2 224.70 wind 3 43200 < th dose independent rect. 20 2
3 224.76 wind 3 43200 > th dose independent rect. 19 3
10 225.31 wind 5 43200 < th dose dependent rect. 19 3
13 225.59 temperature 25 4320 > th dose dependent rect. 7 1
24 226.30 radiation 40 43200 < th dose independent rect. 9 1
25 226.36 radiation 40 43200 < th dose independent rect. 9 3
29 226.43 radiation 40 43200 < th dose independent rect. 9 23
33 226.45 radiation 40 43200 < th dose independent rect. 9 8
54 226.55 radiation 40 43200 > th dose dependent rect. 11 2
55 226.56 radiation 20 43200 < th dose independent rect. 8 1
73 226.60 radiation 30 43200 < th dose independent rect. 11 1
78 226.63 radiation 40 43200 < th dose independent rect. 15 23
79 226.64 radiation 40 43200 < th dose independent sin 23 NA
87 226.65 radiation 40 43200 < th dose independent rect. 13 23
91 226.67 radiation 40 43200 < th dose independent no NA NA
92 226.67 radiation 40 43200 < th dose independent rect. 7 10
154 226.67 radiation 30 43200 < th dose independent rect. 16 20
200 226.68 radiation 30 43200 < th dose independent rect. 6 6
363 226.82 radiation 40 43200 > th dose dependent rect. 10 22
404 226.84 radiation 40 43200 > th dose dependent sin 4 NA
428 226.85 radiation 40 43200 > th dose dependent sin 2 NA
463 226.88 temperature 30 43200 > th dose independent rect. 15 2
505 226.89 radiation 30 43200 > th dose dependent rect. 9 1
526 226.90 radiation 40 43200 > th dose dependent no NA NA
682 226.91 temperature 30 43200 < th dose independent rect. 15 2
759 226.93 temperature 25 4320 > th dose dependent rect. 2 7
776 226.94 temperature 30 43200 < th dose independent rect. 14 4
866 226.96 radiation 40 43200 > th dose independent rect. 9 2
868 226.96 temperature 30 43200 > th dose independent rect. 14 4
947 226.99 temperature 30 43200 > th dose independent rect. 14 22
953 227.00 radiation 20 43200 < th dose independent sin 11 NA
958 227.00 temperature 30 43200 < th dose independent rect. 14 20
959 227.00 temperature 30 43200 < th dose independent rect. 14 22