Os01g0146600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
FiT-DB / Search/ Help/ Sample detail
|
Os01g0146600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Conserved hypothetical protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 59.21 | 0.362 | 3.36 | 0.337 | 0.11 | -0.489 | 0.238 | -0.0694 | 0.0896 | 9.15 | 21.59 | 787 | -- | -- |
| 59.22 | 0.358 | 3.36 | 0.355 | 0.111 | -0.485 | 0.265 | -- | 0.0939 | 9.17 | 21.53 | 787 | -- | -- |
| 59.35 | 0.359 | 3.36 | 0.317 | 0.113 | -0.496 | -- | -0.178 | 0.0835 | 8.51 | 21.56 | 805 | -- | -- |
| 59.45 | 0.359 | 3.36 | 0.365 | 0.114 | -0.488 | -- | -- | 0.0945 | 8.5 | 21.56 | 805 | -- | -- |
| 60.02 | 0.361 | 3.36 | 0.324 | -- | -0.52 | -- | -0.173 | 0.0938 | -- | 21.6 | 787 | -- | -- |
| 67.75 | 0.386 | 3.38 | 0.174 | 0.202 | -- | 0.257 | -- | -0.0472 | 9.27 | -- | -- | -- | -- |
| 67.98 | 0.386 | 3.38 | 0.183 | 0.202 | -- | -- | -- | -0.0471 | 9.17 | -- | -- | -- | -- |
| 60.12 | 0.361 | 3.36 | 0.375 | -- | -0.516 | -- | -- | 0.103 | -- | 21.55 | 781 | -- | -- |
| 62.62 | 0.369 | 3.37 | -- | 0.129 | -0.397 | -- | -- | 0.0312 | 8.61 | 21.56 | 780 | -- | -- |
| 70.34 | 0.392 | 3.39 | 0.183 | -- | -- | -- | -- | -0.046 | -- | -- | -- | -- | -- |
| 68.87 | 0.388 | 3.39 | -- | 0.202 | -- | -- | -- | -0.0675 | 9.1 | -- | -- | -- | -- |
| 63.51 | 0.371 | 3.37 | -- | -- | -0.428 | -- | -- | 0.0401 | -- | 21.52 | 780 | -- | -- |
| 71.23 | 0.394 | 3.39 | -- | -- | -- | -- | -- | -0.0663 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 56.19 | temperature | 10 | 30 | > th | dose dependent | rect. | 3 | 23 |
| 7 | 57.56 | temperature | 15 | 720 | > th | dose dependent | rect. | 3 | 4 |
| 11 | 58.09 | temperature | 10 | 720 | > th | dose dependent | rect. | 3 | 6 |
| 16 | 58.40 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 10 |
| 18 | 58.48 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 14 |
| 19 | 58.53 | temperature | 25 | 720 | < th | dose dependent | rect. | 20 | 16 |
| 23 | 58.60 | temperature | 25 | 720 | < th | dose dependent | sin | 9 | NA |
| 37 | 58.68 | temperature | 15 | 720 | > th | dose dependent | rect. | 21 | 12 |
| 51 | 58.77 | temperature | 30 | 720 | < th | dose dependent | rect. | 24 | 8 |
| 59 | 58.80 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 18 |
| 78 | 58.90 | temperature | 20 | 720 | > th | dose independent | rect. | 3 | 12 |
| 83 | 58.93 | temperature | 30 | 720 | < th | dose dependent | rect. | 1 | 2 |
| 102 | 58.97 | temperature | 10 | 720 | > th | dose dependent | sin | 8 | NA |
| 106 | 58.98 | temperature | 20 | 720 | > th | dose independent | rect. | 21 | 18 |
| 113 | 59.00 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 20 |
| 261 | 59.41 | radiation | 1 | 43200 | < th | dose dependent | rect. | 3 | 1 |
| 309 | 59.56 | temperature | 25 | 720 | < th | dose dependent | rect. | 24 | 23 |
| 332 | 59.61 | temperature | 20 | 720 | > th | dose independent | rect. | 3 | 6 |
| 349 | 59.66 | temperature | 20 | 720 | > th | dose independent | rect. | 3 | 4 |
| 355 | 59.67 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |
| 385 | 59.72 | temperature | 25 | 720 | < th | dose dependent | rect. | 10 | 23 |
| 424 | 59.83 | temperature | 30 | 10 | < th | dose dependent | rect. | 2 | 15 |
| 448 | 59.86 | temperature | 25 | 720 | < th | dose dependent | rect. | 4 | 23 |
| 449 | 59.87 | temperature | 20 | 720 | > th | dose independent | sin | 6 | NA |
| 460 | 59.89 | temperature | 15 | 270 | > th | dose dependent | rect. | 3 | 12 |
| 504 | 59.97 | temperature | 20 | 720 | > th | dose independent | rect. | 3 | 8 |
| 588 | 60.13 | temperature | 20 | 720 | > th | dose independent | rect. | 21 | 14 |
| 622 | 60.19 | temperature | 20 | 720 | < th | dose independent | rect. | 21 | 16 |
| 631 | 60.21 | temperature | 20 | 720 | > th | dose independent | rect. | 21 | 12 |
| 641 | 60.22 | temperature | 25 | 720 | < th | dose dependent | rect. | 5 | 1 |
| 668 | 60.27 | temperature | 15 | 10 | > th | dose dependent | sin | 4 | NA |
| 673 | 60.28 | temperature | 20 | 720 | > th | dose independent | rect. | 3 | 21 |
| 738 | 60.37 | temperature | 20 | 720 | < th | dose independent | sin | 7 | NA |
| 745 | 60.37 | temperature | 30 | 10 | < th | dose dependent | rect. | 7 | 23 |
| 746 | 60.38 | temperature | 20 | 720 | > th | dose independent | rect. | 21 | 10 |
| 889 | 60.55 | temperature | 20 | 720 | > th | dose independent | rect. | 23 | 10 |