Os01g0146200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os01g0146200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 279.52 | 0.786 | 4.96 | 2.39 | 4.56 | 2.5 | -1.93 | -3.1 | 0.554 | 12.2 | 0.3 | 295 | -- | -- |
| 286.77 | 0.789 | 4.97 | 2.09 | 4.11 | 2.15 | 1.04 | -- | 0.548 | 12.1 | 0.31 | 336 | -- | -- |
| 280.73 | 0.78 | 4.98 | 2.3 | 4.38 | 2.36 | -- | -1.52 | 0.531 | 12.1 | 0.3 | 309 | -- | -- |
| 291.1 | 0.795 | 4.99 | 2.29 | 4.76 | 2.74 | -- | -- | 0.535 | 12.3 | 0.3 | 312 | -- | -- |
| 376.63 | 0.904 | 5.05 | 2.1 | -- | 2.94 | -- | -2.46 | 0.21 | -- | 0.61 | 1102 | -- | -- |
| 323.58 | 0.843 | 5.01 | 2.02 | 2.5 | -- | 0.561 | -- | 0.427 | 9.86 | -- | -- | -- | -- |
| 324.78 | 0.844 | 5.01 | 2.04 | 2.49 | -- | -- | -- | 0.427 | 9.84 | -- | -- | -- | -- |
| 311.83 | 0.822 | 5.01 | 2.6 | -- | 4.2 | -- | -- | 0.722 | -- | 0.3002 | 1133 | -- | -- |
| 426.57 | 0.962 | 4.96 | -- | 4.11 | 2.1 | -- | -- | 0.298 | 11.9 | 0.4286 | 314 | -- | -- |
| 696.9 | 1.23 | 5.08 | 2.02 | -- | -- | -- | -- | 0.428 | -- | -- | -- | -- | -- |
| 434.77 | 0.975 | 5.06 | -- | 2.49 | -- | -- | -- | 0.2 | 9.78 | -- | -- | -- | -- |
| 485.5 | 1.03 | 5.08 | -- | -- | 4.09 | -- | -- | 0.493 | -- | 0.6561 | 1130 | -- | -- |
| 804.17 | 1.32 | 5.13 | -- | -- | -- | -- | -- | 0.205 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 269.83 | radiation | 10.0 | 43200 | > th | dose independent | rect. | 9 | 2 |
| 4 | 270.40 | radiation | 10.0 | 43200 | > th | dose independent | rect. | 7 | 4 |
| 6 | 270.67 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 17 | 9 |
| 7 | 270.69 | atmosphere | 995.0 | 14400 | > th | dose dependent | rect. | 10 | 1 |
| 9 | 270.72 | atmosphere | 1015.0 | 14400 | < th | dose dependent | rect. | 10 | 1 |
| 10 | 270.91 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 17 | 5 |
| 11 | 271.02 | atmosphere | 1015.0 | 14400 | < th | dose dependent | rect. | 10 | 3 |
| 14 | 271.08 | radiation | 10.0 | 43200 | > th | dose independent | rect. | 7 | 6 |
| 33 | 271.29 | atmosphere | 995.0 | 14400 | > th | dose dependent | rect. | 4 | 3 |
| 34 | 271.30 | atmosphere | 995.0 | 14400 | > th | dose dependent | rect. | 6 | 1 |
| 36 | 271.33 | atmosphere | 995.0 | 14400 | > th | dose dependent | rect. | 4 | 1 |
| 64 | 271.63 | atmosphere | 1015.0 | 14400 | < th | dose dependent | rect. | 23 | 1 |
| 81 | 271.67 | atmosphere | 995.0 | 14400 | > th | dose dependent | rect. | 22 | 9 |
| 82 | 271.67 | atmosphere | 995.0 | 14400 | > th | dose dependent | rect. | 3 | 10 |
| 83 | 271.67 | atmosphere | 995.0 | 14400 | > th | dose dependent | rect. | 21 | 16 |
| 113 | 271.74 | atmosphere | 1015.0 | 14400 | < th | dose dependent | rect. | 4 | 1 |
| 123 | 271.77 | atmosphere | 1015.0 | 14400 | < th | dose dependent | rect. | 21 | 10 |
| 131 | 271.78 | atmosphere | 1015.0 | 14400 | < th | dose dependent | rect. | 21 | 16 |
| 140 | 271.81 | atmosphere | 995.0 | 14400 | > th | dose dependent | sin | 7 | NA |
| 143 | 271.82 | radiation | 10.0 | 43200 | > th | dose independent | sin | 8 | NA |
| 165 | 271.85 | atmosphere | 1015.0 | 14400 | < th | dose dependent | rect. | 3 | 4 |
| 257 | 271.98 | atmosphere | 1015.0 | 14400 | < th | dose dependent | rect. | 3 | 10 |
| 272 | 272.00 | atmosphere | 1015.0 | 14400 | < th | dose dependent | sin | 7 | NA |
| 276 | 272.00 | atmosphere | 1015.0 | 14400 | < th | dose dependent | rect. | 3 | 12 |
| 321 | 272.06 | atmosphere | 995.0 | 14400 | > th | dose dependent | rect. | 23 | 1 |
| 386 | 272.15 | atmosphere | 995.0 | 14400 | > th | dose dependent | rect. | 22 | 3 |
| 521 | 272.32 | atmosphere | 1015.0 | 14400 | < th | dose dependent | rect. | 3 | 21 |
| 522 | 272.32 | atmosphere | 1015.0 | 14400 | < th | dose dependent | rect. | 9 | 22 |
| 548 | 272.35 | atmosphere | 1015.0 | 14400 | < th | dose dependent | no | NA | NA |
| 685 | 272.49 | atmosphere | 995.0 | 14400 | > th | dose dependent | rect. | 3 | 22 |
| 687 | 272.50 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 17 | 5 |
| 688 | 272.50 | atmosphere | 995.0 | 14400 | > th | dose dependent | no | NA | NA |
| 724 | 272.53 | atmosphere | 995.0 | 14400 | > th | dose dependent | rect. | 8 | 23 |
| 774 | 272.59 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 17 | 5 |
| 776 | 272.59 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 17 | 5 |
| 894 | 272.76 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 23 | 1 |
| 896 | 272.76 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 23 | 1 |
| 923 | 272.80 | radiation | 20.0 | 43200 | < th | dose dependent | rect. | 9 | 4 |
| 935 | 272.82 | radiation | 20.0 | 43200 | < th | dose dependent | rect. | 12 | 1 |