Os01g0144900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Hypothetical protein.
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Os01g0144900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 168.49 | 0.61 | 7.21 | -1.41 | 0.709 | -5.41 | -0.046 | -6.62 | -0.00259 | 4.47 | 19.19 | 4817 | -- | -- |
| 176.47 | 0.619 | 7.36 | -1.61 | 0.671 | -2.9 | 0.144 | -- | -0.0514 | 4.54 | 20.2 | 6345 | -- | -- |
| 168.28 | 0.604 | 7.21 | -1.38 | 0.709 | -5.45 | -- | -6.6 | 0.0108 | 4.44 | 19.01 | 4817 | -- | -- |
| 176 | 0.618 | 7.36 | -1.52 | 0.726 | -2.83 | -- | -- | -0.064 | 4.53 | 20.15 | 6343 | -- | -- |
| 191.43 | 0.644 | 7.14 | -1.53 | -- | -7.03 | -- | -9.55 | 0.032 | -- | 18.84 | 5442 | -- | -- |
| 238.64 | 0.724 | 7.27 | -0.261 | 0.734 | -- | -0.178 | -- | 0.368 | 4.3 | -- | -- | -- | -- |
| 238.72 | 0.724 | 7.27 | -0.259 | 0.734 | -- | -- | -- | 0.369 | 4.37 | -- | -- | -- | -- |
| 202.6 | 0.663 | 7.36 | -1.45 | -- | -2.73 | -- | -- | -0.0331 | -- | 20.26 | 5432 | -- | -- |
| 203.46 | 0.664 | 7.31 | -- | 0.686 | -1.72 | -- | -- | 0.247 | 4.63 | 19.69 | 2313 | -- | -- |
| 267.67 | 0.764 | 7.27 | -0.23 | -- | -- | -- | -- | 0.388 | -- | -- | -- | -- | -- |
| 240.48 | 0.725 | 7.26 | -- | 0.729 | -- | -- | -- | 0.397 | 4.38 | -- | -- | -- | -- |
| 224.81 | 0.698 | 7.32 | -- | -- | -1.79 | -- | -- | 0.186 | -- | 22.8 | 1110 | -- | -- |
| 269.07 | 0.766 | 7.27 | -- | -- | -- | -- | -- | 0.414 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 168.78 | temperature | 20.0 | 4320 | < th | dose dependent | rect. | 5 | 1 |
| 9 | 171.56 | temperature | 20.0 | 4320 | < th | dose dependent | rect. | 12 | 19 |
| 22 | 171.86 | temperature | 20.0 | 4320 | < th | dose dependent | rect. | 1 | 9 |
| 35 | 172.03 | temperature | 20.0 | 4320 | < th | dose dependent | rect. | 24 | 16 |
| 61 | 172.21 | temperature | 20.0 | 4320 | < th | dose dependent | sin | 7 | NA |
| 156 | 172.85 | temperature | 20.0 | 4320 | < th | dose dependent | rect. | 1 | 1 |
| 240 | 173.49 | temperature | 20.0 | 4320 | < th | dose dependent | no | NA | NA |
| 271 | 173.96 | temperature | 20.0 | 4320 | < th | dose dependent | rect. | 3 | 23 |
| 322 | 175.33 | atmosphere | 1015.0 | 4320 | > th | dose independent | rect. | 12 | 8 |
| 325 | 175.39 | atmosphere | 1015.0 | 4320 | < th | dose independent | rect. | 12 | 8 |
| 353 | 175.95 | atmosphere | 1015.0 | 4320 | > th | dose dependent | rect. | 12 | 7 |
| 365 | 176.40 | atmosphere | 1015.0 | 4320 | < th | dose independent | rect. | 13 | 2 |
| 372 | 176.46 | humidity | 50.0 | 14400 | < th | dose dependent | rect. | 12 | 1 |
| 376 | 176.54 | atmosphere | 1015.0 | 4320 | > th | dose independent | rect. | 13 | 2 |
| 383 | 176.73 | atmosphere | 1015.0 | 4320 | > th | dose dependent | rect. | 12 | 3 |
| 387 | 176.94 | humidity | 50.0 | 43200 | < th | dose independent | rect. | 16 | 3 |
| 395 | 177.11 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 8 | 2 |
| 424 | 177.43 | humidity | 50.0 | 43200 | > th | dose independent | rect. | 16 | 4 |
| 455 | 178.09 | humidity | 50.0 | 43200 | > th | dose independent | rect. | 16 | 11 |
| 458 | 178.13 | atmosphere | 1015.0 | 4320 | < th | dose independent | rect. | 19 | 1 |
| 477 | 178.86 | humidity | 60.0 | 43200 | < th | dose dependent | rect. | 6 | 3 |
| 482 | 179.02 | humidity | 60.0 | 43200 | < th | dose dependent | rect. | 20 | 14 |
| 486 | 179.14 | humidity | 60.0 | 43200 | < th | dose dependent | rect. | 4 | 6 |
| 521 | 179.87 | radiation | 10.0 | 4320 | > th | dose dependent | rect. | 5 | 2 |
| 533 | 179.90 | humidity | 60.0 | 43200 | < th | dose independent | rect. | 4 | 5 |
| 539 | 180.08 | temperature | 10.0 | 90 | > th | dose dependent | sin | 7 | NA |
| 541 | 180.21 | humidity | 60.0 | 43200 | < th | dose dependent | rect. | 17 | 1 |
| 542 | 180.23 | temperature | 30.0 | 90 | < th | dose dependent | sin | 7 | NA |
| 544 | 180.28 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 9 | 1 |
| 556 | 180.52 | humidity | 50.0 | 43200 | < th | dose dependent | sin | 8 | NA |
| 578 | 180.99 | humidity | 60.0 | 43200 | < th | dose independent | rect. | 21 | 12 |
| 580 | 181.03 | humidity | 50.0 | 43200 | < th | dose dependent | rect. | 19 | 19 |
| 599 | 181.28 | humidity | 60.0 | 43200 | > th | dose independent | rect. | 4 | 5 |
| 605 | 181.31 | humidity | 50.0 | 43200 | < th | dose dependent | rect. | 4 | 11 |
| 636 | 181.52 | humidity | 60.0 | 43200 | > th | dose independent | rect. | 21 | 12 |
| 683 | 182.24 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 6 | 2 |
| 684 | 182.24 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 6 | 2 |
| 708 | 182.61 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 20 | 15 |
| 730 | 182.83 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 731 | 182.83 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 7 | 1 |
| 737 | 182.88 | humidity | 80.0 | 43200 | < th | dose dependent | rect. | 17 | 14 |
| 750 | 182.94 | humidity | 50.0 | 43200 | < th | dose independent | sin | 8 | NA |
| 752 | 182.98 | humidity | 50.0 | 14400 | < th | dose independent | rect. | 12 | 1 |
| 753 | 182.98 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 7 | 3 |
| 754 | 182.98 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 7 | 3 |
| 785 | 183.19 | humidity | 90.0 | 43200 | < th | dose dependent | rect. | 5 | 2 |
| 787 | 183.23 | humidity | 50.0 | 43200 | > th | dose independent | sin | 8 | NA |
| 850 | 183.73 | atmosphere | 1015.0 | 4320 | > th | dose dependent | sin | 19 | NA |
| 858 | 183.79 | humidity | 80.0 | 43200 | < th | dose dependent | sin | 12 | NA |
| 872 | 183.93 | humidity | 50.0 | 43200 | < th | dose dependent | rect. | 12 | 22 |
| 883 | 184.02 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 12 | 1 |
| 897 | 184.11 | wind | 3.0 | 43200 | > th | dose independent | rect. | 1 | 1 |
| 923 | 184.27 | humidity | 50.0 | 43200 | > th | dose independent | rect. | 19 | 17 |
| 927 | 184.28 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 8 | 3 |
| 929 | 184.30 | humidity | 60.0 | 43200 | < th | dose dependent | rect. | 16 | 15 |
| 935 | 184.33 | humidity | 50.0 | 43200 | < th | dose dependent | rect. | 4 | 18 |
| 943 | 184.34 | humidity | 50.0 | 43200 | < th | dose dependent | no | NA | NA |
| 972 | 184.39 | humidity | 50.0 | 43200 | < th | dose independent | rect. | 19 | 18 |