Os01g0144600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os01g0144600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 22.21 | 0.221 | 10.5 | -0.83 | 0.378 | -0.454 | 0.269 | 0.399 | -0.173 | 1.37 | 20 | 4389 | -- | -- |
| 22.42 | 0.221 | 10.5 | -0.786 | 0.363 | -0.524 | 0.302 | -- | -0.163 | 1.37 | 19.87 | 4392 | -- | -- |
| 22.49 | 0.221 | 10.5 | -0.836 | 0.382 | -0.472 | -- | 0.359 | -0.173 | 1.45 | 19.9 | 4488 | -- | -- |
| 22.64 | 0.222 | 10.5 | -0.787 | 0.38 | -0.553 | -- | -- | -0.158 | 1.47 | 19.69 | 4480 | -- | -- |
| 30.7 | 0.258 | 10.5 | -0.858 | -- | -0.437 | -- | 0.474 | -0.196 | -- | 21.21 | 3878 | -- | -- |
| 27.23 | 0.245 | 10.5 | -0.444 | 0.386 | -- | 0.271 | -- | -0.016 | 1.43 | -- | -- | -- | -- |
| 27.52 | 0.246 | 10.5 | -0.454 | 0.387 | -- | -- | -- | -0.0177 | 1.53 | -- | -- | -- | -- |
| 30.64 | 0.258 | 10.5 | -0.68 | -- | -0.479 | -- | -- | -0.153 | -- | 21.22 | 2477 | -- | -- |
| 30.59 | 0.259 | 10.5 | -- | 0.443 | -0.196 | -- | -- | -0.0203 | 1.3 | 22.4 | 1503 | -- | -- |
| 36.68 | 0.283 | 10.5 | -0.438 | -- | -- | -- | -- | -0.00931 | -- | -- | -- | -- | -- |
| 32.95 | 0.268 | 10.5 | -- | 0.379 | -- | -- | -- | 0.0328 | 1.49 | -- | -- | -- | -- |
| 38.64 | 0.29 | 10.4 | -- | -- | -0.205 | -- | -- | 0.0251 | -- | 25.18 | 1062 | -- | -- |
| 41.75 | 0.302 | 10.4 | -- | -- | -- | -- | -- | 0.0393 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 20.52 | temperature | 20 | 90 | > th | dose independent | rect. | 17 | 11 |
| 2 | 20.52 | temperature | 15 | 270 | > th | dose dependent | rect. | 17 | 10 |
| 7 | 20.83 | temperature | 20 | 90 | > th | dose independent | rect. | 17 | 19 |
| 12 | 20.97 | temperature | 20 | 270 | > th | dose dependent | rect. | 17 | 17 |
| 13 | 21.00 | temperature | 30 | 270 | < th | dose dependent | rect. | 17 | 13 |
| 14 | 21.02 | temperature | 30 | 270 | < th | dose dependent | rect. | 15 | 15 |
| 16 | 21.03 | temperature | 30 | 270 | < th | dose dependent | rect. | 12 | 18 |
| 24 | 21.12 | temperature | 20 | 270 | > th | dose dependent | sin | 11 | NA |
| 26 | 21.12 | temperature | 30 | 270 | < th | dose dependent | rect. | 19 | 11 |
| 32 | 21.18 | temperature | 30 | 270 | < th | dose dependent | rect. | 21 | 9 |
| 90 | 21.48 | temperature | 30 | 90 | < th | dose dependent | sin | 10 | NA |
| 101 | 21.50 | temperature | 30 | 10 | < th | dose dependent | rect. | 14 | 18 |
| 162 | 21.63 | temperature | 20 | 4320 | < th | dose independent | rect. | 16 | 8 |
| 185 | 21.67 | temperature | 20 | 4320 | < th | dose independent | rect. | 20 | 4 |
| 186 | 21.67 | temperature | 20 | 10 | > th | dose independent | rect. | 20 | 16 |
| 197 | 21.68 | temperature | 20 | 90 | > th | dose independent | sin | 11 | NA |
| 210 | 21.69 | temperature | 20 | 4320 | > th | dose independent | rect. | 16 | 9 |
| 222 | 21.70 | temperature | 30 | 270 | < th | dose dependent | sin | 12 | NA |
| 243 | 21.72 | temperature | 20 | 4320 | < th | dose independent | rect. | 20 | 1 |
| 246 | 21.72 | temperature | 20 | 90 | > th | dose independent | rect. | 7 | 21 |
| 260 | 21.74 | temperature | 20 | 4320 | > th | dose independent | rect. | 20 | 4 |
| 325 | 21.80 | temperature | 20 | 10 | > th | dose independent | rect. | 7 | 22 |
| 329 | 21.81 | temperature | 20 | 4320 | < th | dose independent | sin | 15 | NA |
| 336 | 21.81 | temperature | 20 | 30 | < th | dose independent | rect. | 16 | 16 |
| 340 | 21.82 | temperature | 20 | 90 | < th | dose independent | rect. | 17 | 14 |
| 351 | 21.83 | temperature | 20 | 10 | < th | dose independent | sin | 10 | NA |
| 364 | 21.84 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 2 |
| 377 | 21.85 | temperature | 20 | 4320 | > th | dose independent | sin | 15 | NA |
| 379 | 21.85 | temperature | 20 | 4320 | > th | dose independent | rect. | 22 | 1 |
| 380 | 21.85 | temperature | 20 | 1440 | < th | dose independent | rect. | 2 | 5 |
| 382 | 21.85 | temperature | 20 | 1440 | > th | dose independent | rect. | 2 | 6 |
| 385 | 21.85 | temperature | 20 | 10 | < th | dose independent | rect. | 17 | 13 |
| 464 | 21.92 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 535 | 21.98 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 2 |
| 555 | 21.99 | temperature | 20 | 90 | < th | dose independent | rect. | 19 | 12 |
| 562 | 21.99 | temperature | 20 | 90 | < th | dose independent | rect. | 13 | 18 |
| 579 | 22.01 | wind | 1 | 14400 | < th | dose independent | rect. | 24 | 2 |
| 606 | 22.02 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 783 | 22.09 | wind | 1 | 14400 | < th | dose dependent | rect. | 23 | 3 |
| 789 | 22.10 | wind | 1 | 14400 | > th | dose independent | rect. | 24 | 2 |
| 809 | 22.10 | temperature | 15 | 4320 | > th | dose dependent | rect. | 20 | 1 |
| 861 | 22.13 | temperature | 20 | 90 | > th | dose independent | rect. | 23 | 13 |
| 875 | 22.13 | temperature | 25 | 4320 | < th | dose dependent | rect. | 20 | 1 |
| 939 | 22.16 | temperature | 20 | 4320 | > th | dose independent | rect. | 6 | 22 |
| 943 | 22.16 | temperature | 20 | 4320 | < th | dose independent | rect. | 6 | 22 |
| 959 | 22.17 | temperature | 20 | 90 | < th | dose independent | rect. | 21 | 10 |