Os01g0144100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Thylakoid lumenal 15 kDa protein, chloroplast precursor (p15).
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Os01g0144100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Thylakoid lumenal 15 kDa protein, chloroplast precursor (p15).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = sin)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 198.66 | 0.662 | 10.3 | -2.09 | 2.81 | 2.68 | 3.92 | 5.31 | -1.16 | 21.3 | 17.12 | 266 | 22.4 | -- |
| 210.55 | 0.676 | 10.4 | -2.7 | 2.12 | 2.23 | 2.02 | -- | -1.34 | 20.7 | 21.9 | 273 | 23.2 | -- |
| 215.69 | 0.684 | 10.2 | -1.99 | 1.91 | 1.75 | -- | 5.16 | -1.06 | 20.3 | 22.86 | 349 | 0.406 | -- |
| 221.35 | 0.693 | 10.3 | -2.69 | 1.97 | 2.14 | -- | -- | -1.33 | 20.5 | 22.7 | 330 | 0.186 | -- |
| 299.24 | 0.806 | 10.1 | -1.15 | -- | 1.65 | -- | 6.57 | -0.91 | -- | 22.96 | 860 | 22.1 | -- |
| 275.09 | 0.778 | 10.3 | -2.32 | 1.65 | -- | 1.95 | -- | -1.01 | 19.3 | -- | -- | -- | -- |
| 285.41 | 0.791 | 10.3 | -2.36 | 1.65 | -- | -- | -- | -1.01 | 19.3 | -- | -- | -- | -- |
| 253.69 | 0.742 | 10.3 | -2.98 | -- | 2.62 | -- | -- | -1.36 | -- | 11.87 | 900 | 19.1 | -- |
| 402.11 | 0.934 | 10.3 | -- | 1.68 | 1.71 | -- | -- | -0.901 | 20 | 25.04 | 339 | 1.92 | -- |
| 429.72 | 0.969 | 10.2 | -2.39 | -- | -- | -- | -- | -1.03 | -- | -- | -- | -- | -- |
| 432.39 | 0.973 | 10.2 | -- | 1.67 | -- | -- | -- | -0.742 | 19.2 | -- | -- | -- | -- |
| 430.93 | 0.967 | 10.2 | -- | -- | 1.81 | -- | -- | -0.77 | -- | -96.27 | 929 | 18.6 | -- |
| 580.41 | 1.12 | 10.2 | -- | -- | -- | -- | -- | -0.768 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 196.84 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 23 | 15 |
| 2 | 196.88 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 3 | 12 |
| 6 | 198.47 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 7 | 23 |
| 9 | 198.98 | temperature | 15.0 | 270 | > th | dose dependent | sin | 5 | NA |
| 23 | 201.01 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 3 | 18 |
| 29 | 201.86 | temperature | 30.0 | 270 | < th | dose dependent | sin | 3 | NA |
| 30 | 201.92 | temperature | 15.0 | 90 | > th | dose dependent | rect. | 8 | 21 |
| 38 | 202.22 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 8 | 22 |
| 96 | 206.70 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 7 | 8 |
| 195 | 211.44 | atmosphere | 995.0 | 90 | > th | dose dependent | rect. | 5 | 18 |
| 264 | 213.35 | atmosphere | 1015.0 | 10 | < th | dose dependent | rect. | 8 | 22 |
| 279 | 213.92 | atmosphere | 1015.0 | 90 | < th | dose dependent | rect. | 8 | 21 |
| 362 | 215.98 | temperature | 25.0 | 270 | < th | dose independent | rect. | 3 | 18 |
| 365 | 216.08 | temperature | 25.0 | 270 | > th | dose independent | rect. | 23 | 16 |
| 367 | 216.10 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 8 | 10 |
| 398 | 216.60 | temperature | 30.0 | 270 | < th | dose dependent | no | NA | NA |
| 401 | 216.66 | atmosphere | 1000.0 | 90 | > th | dose independent | rect. | 5 | 18 |
| 406 | 216.69 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 16 | 23 |
| 425 | 216.99 | temperature | 25.0 | 270 | > th | dose independent | rect. | 7 | 9 |
| 436 | 217.37 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 13 | 23 |
| 440 | 217.41 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 6 | 10 |
| 470 | 217.93 | temperature | 25.0 | 270 | < th | dose independent | rect. | 3 | 12 |
| 505 | 218.56 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 6 | 8 |
| 546 | 219.05 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 17 | 2 |
| 554 | 219.16 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 9 | 23 |
| 577 | 219.53 | temperature | 25.0 | 270 | > th | dose independent | sin | 3 | NA |
| 581 | 219.59 | atmosphere | 995.0 | 10 | > th | dose dependent | rect. | 6 | 17 |
| 639 | 220.36 | temperature | 25.0 | 270 | < th | dose independent | rect. | 3 | 8 |
| 674 | 220.76 | temperature | 25.0 | 270 | < th | dose independent | sin | 2 | NA |
| 685 | 220.90 | atmosphere | 995.0 | 270 | > th | dose dependent | rect. | 3 | 18 |
| 789 | 222.00 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 6 | 6 |
| 797 | 222.08 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 8 | 14 |
| 799 | 222.09 | temperature | 20.0 | 90 | > th | dose dependent | rect. | 23 | 23 |
| 837 | 222.51 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 23 | 16 |
| 925 | 223.23 | atmosphere | 1000.0 | 10 | > th | dose independent | rect. | 6 | 17 |
| 940 | 223.38 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 17 | 2 |
| 958 | 223.50 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 17 | 2 |
| 959 | 223.50 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 17 | 2 |