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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0143900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.18 (0.041) R2 : 0.275
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.923 (0.106) R2dC : 0.11 R2C : 0.11
β3 : 1.74 (0.183) R2dE : 0.159 R2E : 0.121
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.416 (0.0893) R2dN8 : 0.0527 R2N8 : -0.0084
σ : 0.76
deviance : 266.42
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_____
C
peak time of C : 18.3
E
wheather : radiation
threshold : 1.836
memory length : 1443
response mode : < th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
259.96 0.758 4.23 -0.453 0.876 2.11 1.3 2.04 0.3 18.1 0.9698 1444 -- --
262.68 0.755 4.2 -0.245 0.873 1.83 1.26 -- 0.364 17.8 1.34 1454 -- --
263.92 0.757 4.23 -0.481 0.886 2.12 -- 2.17 0.301 18.3 0.9646 1440 -- --
264.76 0.758 4.17 -0.293 0.861 1.77 -- -- 0.414 17.8 1.837 1462 -- --
304.18 0.812 4.21 -0.509 -- 2.21 -- 2.32 0.28 -- 0.9959 1448 -- --
307.09 0.822 4.25 -0.568 0.913 -- 1.39 -- 0.114 18.1 -- -- -- --
311.58 0.827 4.25 -0.584 0.922 -- -- -- 0.118 18.4 -- -- -- --
303.79 0.812 4.16 -0.312 -- 1.83 -- -- 0.408 -- 1.83 1454 -- --
266.42 0.76 4.18 -- 0.923 1.74 -- -- 0.416 18.3 1.836 1443 -- --
355.7 0.881 4.23 -0.608 -- -- -- -- 0.0984 -- -- -- -- --
320.57 0.838 4.23 -- 0.93 -- -- -- 0.183 18.3 -- -- -- --
306.28 0.815 4.16 -- -- 1.87 -- -- 0.437 -- 1.839 1452 -- --
365.46 0.892 4.22 -- -- -- -- -- 0.166 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 253.00 humidity 80 1440 < th dose independent rect. 7 2
2 253.08 humidity 80 1440 < th dose independent rect. 6 4
3 253.28 humidity 80 1440 < th dose independent rect. 6 8
6 253.94 humidity 80 1440 > th dose independent rect. 7 1
9 254.58 radiation 1 720 > th dose independent rect. 9 21
11 254.70 radiation 1 1440 < th dose independent rect. 11 20
27 256.09 radiation 1 1440 > th dose independent rect. 11 20
42 256.94 radiation 1 720 < th dose dependent rect. 5 13
44 257.06 humidity 80 1440 > th dose independent rect. 6 8
53 257.49 radiation 1 720 < th dose independent rect. 5 22
62 257.84 wind 7 43200 < th dose independent rect. 12 2
70 258.18 wind 7 43200 > th dose independent rect. 12 2
74 258.36 radiation 1 1440 < th dose dependent rect. 11 19
77 258.41 radiation 1 1440 < th dose dependent rect. 9 21
78 258.44 humidity 80 1440 < th dose independent sin 4 NA
82 258.47 radiation 1 720 < th dose dependent rect. 5 22
84 258.50 temperature 25 4320 < th dose independent rect. 7 3
104 258.94 temperature 25 720 > th dose dependent rect. 17 21
105 258.97 temperature 25 4320 < th dose independent rect. 8 1
107 259.00 wind 5 43200 > th dose dependent rect. 12 2
110 259.07 radiation 20 14400 > th dose dependent rect. 16 1
111 259.10 radiation 1 720 > th dose independent rect. 17 13
131 259.27 temperature 25 4320 > th dose independent rect. 7 3
139 259.42 wind 7 43200 > th dose dependent rect. 12 6
148 259.56 wind 7 43200 > th dose dependent rect. 11 11
149 259.60 humidity 80 1440 > th dose independent rect. 6 3
162 259.76 radiation 1 720 < th dose independent rect. 5 13
168 259.81 temperature 20 4320 > th dose dependent rect. 4 1
172 259.85 radiation 1 1440 < th dose independent rect. 5 16
174 259.86 radiation 1 1440 < th dose independent rect. 5 18
190 260.01 radiation 1 1440 < th dose independent rect. 2 17
192 260.03 radiation 1 1440 < th dose independent rect. 2 19
193 260.03 radiation 1 1440 < th dose independent rect. 24 19
194 260.03 radiation 1 1440 < th dose independent rect. 20 23
197 260.04 radiation 1 1440 < th dose independent rect. 2 21
198 260.04 radiation 1 1440 < th dose independent rect. 22 21
199 260.04 radiation 1 1440 < th dose independent rect. 24 21
203 260.05 radiation 1 1440 < th dose independent rect. 2 23
221 260.08 radiation 1 1440 < th dose independent sin 13 NA
222 260.08 radiation 1 1440 < th dose independent no NA NA
255 260.36 radiation 1 1440 < th dose dependent sin 0 NA
278 260.64 radiation 1 1440 < th dose independent sin 23 NA
283 260.72 wind 7 43200 > th dose independent rect. 11 7
296 260.83 wind 7 43200 > th dose independent rect. 11 11
297 260.83 radiation 1 1440 < th dose independent rect. 16 23
298 260.85 wind 7 43200 > th dose dependent rect. 14 3
316 261.02 radiation 1 1440 < th dose dependent rect. 3 15
318 261.02 radiation 1 1440 < th dose dependent rect. 24 18
323 261.03 radiation 1 1440 < th dose dependent rect. 20 22
333 261.06 humidity 80 720 > th dose independent rect. 6 16
338 261.08 radiation 1 1440 > th dose independent rect. 5 14
379 261.24 radiation 1 1440 < th dose dependent rect. 3 22
381 261.25 temperature 25 720 > th dose dependent rect. 9 14
400 261.28 radiation 1 1440 < th dose dependent no NA NA
417 261.31 wind 7 43200 > th dose dependent rect. 15 1
430 261.34 wind 9 43200 > th dose independent rect. 14 7
433 261.35 radiation 1 1440 > th dose independent no NA NA
482 261.37 temperature 25 4320 < th dose independent rect. 18 1
490 261.41 wind 9 43200 < th dose independent rect. 12 11
492 261.43 wind 9 43200 < th dose independent rect. 12 9
497 261.47 wind 7 43200 > th dose independent rect. 11 9
504 261.50 humidity 60 720 > th dose dependent rect. 6 17
505 261.52 humidity 50 720 > th dose dependent rect. 15 8
514 261.61 radiation 1 1440 > th dose independent sin 13 NA
541 261.76 temperature 25 1440 > th dose dependent rect. 7 1
546 261.79 wind 7 43200 < th dose independent rect. 17 1
555 261.82 humidity 80 1440 < th dose dependent rect. 7 3
563 261.86 radiation 1 1440 > th dose independent sin 23 NA
570 261.91 wind 7 43200 < th dose independent rect. 11 7
579 261.94 temperature 25 1440 > th dose dependent rect. 7 8
581 261.95 temperature 25 4320 > th dose independent rect. 17 2
582 261.95 wind 9 43200 < th dose independent rect. 14 7
585 261.97 temperature 25 14400 > th dose independent rect. 19 1
612 262.07 radiation 40 14400 > th dose dependent rect. 15 17
632 262.14 radiation 1 1440 > th dose independent rect. 16 23
638 262.16 temperature 25 1440 > th dose dependent sin 1 NA
647 262.17 temperature 30 720 < th dose independent rect. 15 18
652 262.20 humidity 80 1440 > th dose independent sin 3 NA
689 262.29 radiation 1 1440 < th dose independent rect. 11 8
700 262.29 radiation 30 720 < th dose dependent rect. 15 2
709 262.30 humidity 60 720 > th dose dependent rect. 13 10
714 262.30 radiation 1 1440 < th dose dependent rect. 15 23
724 262.33 radiation 1 1440 < th dose independent rect. 11 10
725 262.33 radiation 1 1440 < th dose independent rect. 11 14
785 262.45 radiation 1 1440 < th dose dependent rect. 9 10
796 262.48 radiation 1 1440 < th dose dependent rect. 11 8
798 262.48 radiation 1 1440 < th dose dependent rect. 9 16
802 262.49 radiation 1 1440 < th dose dependent rect. 9 12
808 262.51 temperature 25 1440 > th dose dependent rect. 7 4
811 262.51 radiation 1 1440 < th dose dependent rect. 11 14
813 262.52 radiation 40 14400 > th dose independent rect. 15 1
830 262.52 radiation 1 1440 < th dose dependent rect. 11 10
861 262.57 humidity 70 720 > th dose independent rect. 15 18
928 262.69 wind 9 43200 < th dose independent rect. 11 14
993 262.82 temperature 25 1440 > th dose dependent rect. 13 22