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Os01g0143800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Mitochondrial glycoprotein family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 12.7 (0.0419) R2 : 0.811
β1 : 1.61 (0.153) R2dD : 0.0476 R2D : 0.0413
β2 : 6.12 (0.142) R2dC : 1.34 R2C : 0.203
β3 : 3.25 (0.117) R2dE : 0.556 R2E : -0.556
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.16 (0.0898) R2dN8 : 0.00185 R2N8 : -0.00884
σ : 0.783
deviance : 282.96
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C
peak time of C : 16.5
E
wheather : radiation
threshold : 0.69
memory length : 101
response mode : < th
dose dependency : dose independent
G
type of G : sin
peak or start time of G : 4.34
open length of G : --

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
280.87 0.787 12.7 1.6 6.11 3.27 1.03 0.125 0.156 16.5 0.7 96 4.19 --
280.87 0.781 12.7 1.61 6.09 3.25 0.92 -- 0.154 16.5 0.6928 95 4.26 --
282.19 0.782 12.7 1.62 6.1 3.23 -- -0.423 0.161 16.5 0.7 101 4.31 --
282.96 0.783 12.7 1.61 6.12 3.25 -- -- 0.16 16.5 0.69 101 4.34 --
383.43 0.912 12.8 1.79 -- 4.45 -- 0.14 -0.125 -- 62.5 149 12.5 --
380.73 0.915 12.8 1.58 4.48 -- 0.276 -- -0.0566 18.8 -- -- -- --
380.92 0.914 12.8 1.57 4.49 -- -- -- -0.0559 18.8 -- -- -- --
379.52 0.907 12.7 1.49 -- 4.49 -- -- -0.0842 -- 59.95 396 14.6 --
352.37 0.874 12.7 -- 6.08 3.24 -- -- 0.0289 16.6 0.7709 101 4.14 --
1433.12 1.77 12.7 1.47 -- -- -- -- -0.143 -- -- -- -- --
446.07 0.988 12.8 -- 4.47 -- -- -- -0.231 18.8 -- -- -- --
439.1 0.976 12.7 -- -- 4.46 -- -- -0.127 -- 60 398 14.6 --
1490.26 1.8 12.7 -- -- -- -- -- -0.307 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 276.59 temperature 10.0 270 > th dose dependent rect. 7 7
5 280.77 temperature 20.0 270 > th dose dependent rect. 8 5
6 280.84 wind 5.0 270 < th dose independent rect. 3 4
10 283.39 radiation 1.0 90 < th dose independent sin 10 NA
12 283.79 radiation 1.0 90 > th dose independent sin 10 NA
13 284.15 radiation 1.0 90 < th dose dependent sin 10 NA
15 285.10 precipitation 0.1 270 < th dose independent rect. 3 4
16 285.10 precipitation 0.1 270 < th dose dependent rect. 3 4
19 285.81 wind 7.0 270 < th dose independent rect. 7 20
20 285.98 humidity 50.0 270 > th dose dependent rect. 20 7
24 286.51 temperature 10.0 270 > th dose dependent rect. 3 4
29 286.81 wind 9.0 270 < th dose dependent rect. 3 4
43 288.28 radiation 1.0 90 > th dose independent rect. 18 15
49 289.16 precipitation 0.1 270 < th dose independent rect. 2 7
50 289.16 precipitation 0.1 270 < th dose dependent rect. 2 7
58 289.62 radiation 1.0 90 > th dose independent rect. 4 5
70 289.73 temperature 10.0 270 > th dose independent rect. 3 4
72 289.73 temperature 30.0 270 < th dose independent rect. 3 4
73 289.73 humidity 50.0 270 > th dose independent rect. 3 4
75 289.73 atmosphere 995.0 270 > th dose independent rect. 3 4
76 289.73 atmosphere 1015.0 270 < th dose independent rect. 3 4
77 289.73 radiation 40.0 270 < th dose independent rect. 3 4
78 289.73 temperature 10.0 270 > th dose independent rect. 7 20
80 290.09 temperature 30.0 270 < th dose independent rect. 2 7
84 290.49 temperature 25.0 270 > th dose independent rect. 8 5
101 291.05 temperature 15.0 270 > th dose independent rect. 13 9
110 291.54 temperature 20.0 270 > th dose dependent rect. 9 2
131 292.22 precipitation 0.1 270 < th dose independent rect. 3 17
132 292.22 precipitation 0.1 270 < th dose dependent rect. 3 17
138 292.46 temperature 15.0 270 > th dose independent rect. 15 16
139 292.50 radiation 40.0 270 < th dose dependent rect. 3 6
143 292.87 precipitation 0.1 270 < th dose independent rect. 7 20
144 292.87 precipitation 0.1 270 < th dose dependent rect. 7 20
155 293.63 temperature 10.0 270 > th dose independent rect. 2 7
157 293.63 humidity 50.0 270 > th dose independent rect. 2 7
158 293.63 atmosphere 995.0 270 > th dose independent rect. 2 7
159 293.63 atmosphere 1015.0 270 < th dose independent rect. 2 7
160 293.63 temperature 10.0 270 > th dose independent rect. 9 17
163 293.87 temperature 30.0 270 < th dose dependent rect. 21 6
165 293.94 precipitation 0.1 270 < th dose independent rect. 16 15
166 293.94 precipitation 0.1 270 < th dose dependent rect. 16 15
199 294.39 radiation 1.0 90 < th dose independent rect. 21 11
204 294.48 radiation 1.0 90 < th dose dependent rect. 21 11
205 294.50 radiation 1.0 90 < th dose independent rect. 21 14
208 294.61 radiation 1.0 90 < th dose dependent rect. 21 14
209 294.62 radiation 1.0 90 < th dose independent rect. 21 16
212 294.67 wind 9.0 270 < th dose independent rect. 20 7
214 294.74 radiation 1.0 90 < th dose dependent rect. 21 16
215 294.75 radiation 30.0 270 < th dose independent rect. 2 7
216 294.80 temperature 10.0 270 > th dose independent rect. 20 7
217 294.80 temperature 30.0 270 < th dose independent rect. 20 7
218 294.80 humidity 50.0 270 > th dose independent rect. 20 7
221 294.80 atmosphere 995.0 270 > th dose independent rect. 20 7
222 294.80 radiation 1.0 270 < th dose independent rect. 20 7
227 294.80 temperature 10.0 270 > th dose independent rect. 3 17
228 294.80 atmosphere 1015.0 270 < th dose independent rect. 3 17
229 294.80 radiation 1.0 270 < th dose dependent rect. 20 7
241 294.92 wind 9.0 270 < th dose independent rect. 7 9
243 294.94 radiation 1.0 90 < th dose independent rect. 21 18
248 295.04 radiation 1.0 90 < th dose dependent rect. 21 18
279 295.87 wind 9.0 270 < th dose independent rect. 22 15
283 296.03 precipitation 0.1 270 < th dose independent rect. 9 17
285 296.03 precipitation 0.1 270 < th dose dependent rect. 9 17
301 296.36 precipitation 0.1 270 < th dose independent rect. 20 7
302 296.36 precipitation 0.1 270 < th dose dependent rect. 20 7
313 296.69 radiation 30.0 270 < th dose independent rect. 15 16
317 296.87 temperature 10.0 270 > th dose independent rect. 7 8
318 296.87 atmosphere 1015.0 270 < th dose independent rect. 7 8
325 296.93 atmosphere 995.0 270 > th dose independent rect. 7 8
327 296.94 atmosphere 995.0 270 > th dose independent rect. 8 19
328 297.00 precipitation 0.1 270 < th dose independent rect. 7 8
329 297.00 precipitation 0.1 270 < th dose dependent rect. 7 8
334 297.13 temperature 10.0 270 > th dose dependent rect. 2 6
339 297.25 temperature 10.0 270 > th dose independent rect. 22 15
340 297.25 atmosphere 995.0 270 > th dose independent rect. 22 15
345 297.35 atmosphere 1015.0 270 < th dose independent rect. 13 9
447 298.59 temperature 15.0 10 > th dose dependent rect. 9 8
450 298.61 wind 1.0 270 > th dose independent rect. 7 8
468 298.94 wind 9.0 270 < th dose independent rect. 15 16
472 299.00 radiation 40.0 90 < th dose independent rect. 4 19
484 299.31 wind 9.0 270 < th dose independent rect. 3 17
565 300.58 temperature 30.0 10 < th dose dependent rect. 22 8
582 300.78 radiation 1.0 90 > th dose dependent rect. 18 13
591 301.02 precipitation 0.1 270 < th dose independent rect. 13 9
593 301.02 precipitation 0.1 270 < th dose dependent rect. 13 9
612 301.11 humidity 50.0 270 > th dose independent rect. 22 15
620 301.33 humidity 50.0 270 > th dose dependent rect. 3 4
626 301.49 wind 9.0 270 < th dose independent rect. 13 9
629 301.55 radiation 1.0 90 > th dose dependent rect. 5 2
702 302.70 wind 1.0 270 > th dose independent rect. 13 9
730 302.97 humidity 50.0 270 > th dose independent rect. 7 8
774 303.34 atmosphere 995.0 270 > th dose independent rect. 16 15
811 303.92 radiation 1.0 270 > th dose independent rect. 8 7
821 303.97 atmosphere 1005.0 270 > th dose independent rect. 4 3
834 304.16 radiation 40.0 270 < th dose dependent rect. 15 16
851 304.40 radiation 40.0 270 < th dose independent rect. 13 9
852 304.41 atmosphere 995.0 270 > th dose independent rect. 3 17
902 304.82 humidity 50.0 270 > th dose independent rect. 8 19
907 304.91 humidity 90.0 10 < th dose independent rect. 5 4
942 305.13 temperature 30.0 270 < th dose dependent rect. 23 2
948 305.20 precipitation 0.1 270 < th dose independent rect. 22 15
949 305.20 precipitation 0.1 270 < th dose dependent rect. 22 15
961 305.26 atmosphere 1015.0 270 < th dose independent rect. 15 16