Os01g0142800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Peptide transporter.
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Os01g0142800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Peptide transporter.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 115.82 | 0.506 | 12.5 | 2.43 | 1.54 | -0.726 | -0.644 | 0.857 | 0.73 | 20 | 20.31 | 1499 | -- | -- |
| 117.47 | 0.505 | 12.5 | 2.43 | 1.54 | -0.719 | -0.603 | -- | 0.726 | 20 | 20.01 | 1503 | -- | -- |
| 116.89 | 0.504 | 12.5 | 2.45 | 1.54 | -0.724 | -- | 0.828 | 0.728 | 20 | 20.01 | 1503 | -- | -- |
| 118.65 | 0.507 | 12.5 | 2.4 | 1.53 | -0.713 | -- | -- | 0.738 | 19.9 | 20.01 | 1519 | -- | -- |
| 241.91 | 0.728 | 12.5 | 2.15 | -- | -0.531 | -- | 0.764 | 0.472 | -- | 20.01 | 1503 | -- | -- |
| 133.58 | 0.542 | 12.6 | 2.09 | 1.54 | -- | -0.658 | -- | 0.478 | 20 | -- | -- | -- | -- |
| 134.85 | 0.544 | 12.6 | 2.11 | 1.54 | -- | -- | -- | 0.477 | 20 | -- | -- | -- | -- |
| 240.22 | 0.725 | 12.6 | 2.11 | -- | -0.54 | -- | -- | 0.437 | -- | 18.62 | 1569 | -- | -- |
| 187.63 | 0.638 | 12.6 | -- | 1.26 | -1.3 | -- | -- | 0.409 | 20.3 | 49.81 | 27245 | -- | -- |
| 264.52 | 0.76 | 12.6 | 2.1 | -- | -- | -- | -- | 0.457 | -- | -- | -- | -- | -- |
| 252.36 | 0.743 | 12.6 | -- | 1.53 | -- | -- | -- | 0.242 | 20.1 | -- | -- | -- | -- |
| 308.24 | 0.818 | 12.7 | -- | -- | -1.41 | -- | -- | 0.171 | -- | 49.71 | 30461 | -- | -- |
| 380.37 | 0.91 | 12.6 | -- | -- | -- | -- | -- | 0.225 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 112.02 | temperature | 25 | 720 | > th | dose dependent | rect. | 22 | 1 |
| 2 | 112.25 | temperature | 25 | 720 | > th | dose dependent | rect. | 20 | 4 |
| 3 | 112.46 | humidity | 60 | 720 | > th | dose dependent | rect. | 19 | 5 |
| 39 | 114.32 | radiation | 20 | 1440 | < th | dose dependent | rect. | 9 | 8 |
| 54 | 114.61 | radiation | 20 | 1440 | < th | dose dependent | rect. | 9 | 16 |
| 71 | 114.91 | radiation | 20 | 1440 | < th | dose dependent | sin | 20 | NA |
| 86 | 115.03 | radiation | 20 | 1440 | < th | dose dependent | rect. | 15 | 2 |
| 89 | 115.06 | radiation | 20 | 1440 | < th | dose dependent | rect. | 13 | 4 |
| 92 | 115.11 | radiation | 20 | 1440 | > th | dose independent | rect. | 9 | 3 |
| 97 | 115.18 | temperature | 25 | 720 | < th | dose independent | rect. | 17 | 7 |
| 98 | 115.20 | radiation | 20 | 1440 | > th | dose independent | rect. | 9 | 22 |
| 101 | 115.22 | radiation | 20 | 1440 | > th | dose independent | rect. | 9 | 8 |
| 128 | 115.28 | humidity | 90 | 720 | > th | dose independent | rect. | 20 | 3 |
| 132 | 115.32 | humidity | 90 | 720 | < th | dose independent | rect. | 17 | 8 |
| 187 | 115.54 | humidity | 90 | 720 | < th | dose dependent | rect. | 19 | 6 |
| 237 | 115.80 | humidity | 70 | 1440 | > th | dose independent | rect. | 19 | 18 |
| 238 | 115.81 | radiation | 20 | 1440 | < th | dose independent | sin | 16 | NA |
| 241 | 115.82 | radiation | 20 | 1440 | > th | dose independent | rect. | 13 | 23 |
| 249 | 115.85 | humidity | 80 | 14400 | > th | dose independent | rect. | 21 | 1 |
| 252 | 115.86 | radiation | 20 | 1440 | > th | dose independent | rect. | 15 | 23 |
| 253 | 115.86 | humidity | 90 | 720 | < th | dose dependent | rect. | 20 | 3 |
| 273 | 115.89 | temperature | 25 | 720 | < th | dose independent | rect. | 19 | 3 |
| 278 | 115.91 | radiation | 20 | 1440 | > th | dose independent | sin | 22 | NA |
| 292 | 115.94 | radiation | 20 | 1440 | < th | dose dependent | rect. | 13 | 10 |
| 294 | 115.95 | radiation | 10 | 1440 | > th | dose independent | rect. | 6 | 11 |
| 302 | 115.95 | radiation | 20 | 1440 | < th | dose dependent | rect. | 13 | 12 |
| 318 | 115.97 | radiation | 20 | 1440 | < th | dose dependent | rect. | 13 | 14 |
| 320 | 115.98 | radiation | 20 | 1440 | < th | dose independent | rect. | 13 | 4 |
| 331 | 116.00 | radiation | 20 | 1440 | < th | dose independent | rect. | 9 | 14 |
| 337 | 116.01 | radiation | 20 | 1440 | < th | dose independent | rect. | 9 | 10 |
| 338 | 116.01 | radiation | 20 | 1440 | < th | dose independent | rect. | 13 | 10 |
| 340 | 116.01 | humidity | 90 | 720 | < th | dose independent | rect. | 16 | 12 |
| 343 | 116.01 | radiation | 20 | 1440 | < th | dose independent | rect. | 9 | 16 |
| 349 | 116.02 | radiation | 20 | 1440 | < th | dose independent | rect. | 13 | 6 |
| 351 | 116.02 | radiation | 20 | 1440 | < th | dose independent | rect. | 9 | 8 |
| 355 | 116.02 | radiation | 20 | 1440 | < th | dose independent | rect. | 9 | 18 |
| 359 | 116.03 | radiation | 20 | 1440 | < th | dose independent | rect. | 13 | 12 |
| 368 | 116.05 | radiation | 20 | 1440 | < th | dose independent | rect. | 13 | 14 |
| 385 | 116.08 | temperature | 25 | 720 | > th | dose independent | rect. | 16 | 8 |
| 390 | 116.09 | radiation | 20 | 1440 | > th | dose independent | no | NA | NA |
| 567 | 116.21 | humidity | 70 | 1440 | > th | dose independent | rect. | 10 | 3 |
| 575 | 116.22 | radiation | 20 | 1440 | < th | dose independent | rect. | 11 | 6 |
| 581 | 116.23 | radiation | 20 | 1440 | < th | dose independent | rect. | 11 | 12 |
| 583 | 116.24 | radiation | 20 | 1440 | < th | dose independent | rect. | 11 | 8 |
| 587 | 116.24 | radiation | 20 | 1440 | < th | dose independent | rect. | 11 | 14 |
| 599 | 116.27 | radiation | 20 | 1440 | < th | dose dependent | rect. | 2 | 15 |
| 608 | 116.28 | radiation | 20 | 1440 | < th | dose dependent | rect. | 24 | 17 |
| 620 | 116.29 | radiation | 20 | 1440 | < th | dose dependent | rect. | 22 | 19 |
| 636 | 116.34 | radiation | 20 | 1440 | > th | dose independent | rect. | 11 | 23 |
| 722 | 116.44 | radiation | 20 | 1440 | < th | dose dependent | no | NA | NA |
| 897 | 116.55 | radiation | 20 | 1440 | < th | dose dependent | rect. | 15 | 23 |
| 937 | 116.58 | radiation | 1 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 957 | 116.62 | humidity | 60 | 14400 | > th | dose independent | rect. | 20 | 10 |
| 980 | 116.69 | humidity | 90 | 720 | < th | dose independent | sin | 15 | NA |