Os01g0142200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os01g0142200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 42.83 | 0.308 | 10.2 | -0.588 | 0.775 | 1.42 | -0.12 | -0.47 | -0.221 | 10.1 | 19.48 | 83 | -- | -- |
| 42.88 | 0.305 | 10.2 | -0.505 | 0.753 | 1.41 | -0.202 | -- | -0.198 | 10.2 | 19.17 | 64 | -- | -- |
| 42.85 | 0.305 | 10.2 | -0.592 | 0.766 | 1.43 | -- | -0.47 | -0.222 | 10.1 | 19.4 | 78 | -- | -- |
| 43.04 | 0.306 | 10.2 | -0.512 | 0.754 | 1.41 | -- | -- | -0.198 | 10.2 | 19.1 | 65 | -- | -- |
| 68.56 | 0.388 | 10.3 | -0.692 | -- | 1.86 | -- | -0.651 | -0.291 | -- | 19 | 10 | -- | -- |
| 72.72 | 0.4 | 10.2 | -0.194 | 1.04 | -- | -0.00792 | -- | 0.0435 | 12 | -- | -- | -- | -- |
| 72.72 | 0.399 | 10.2 | -0.195 | 1.04 | -- | -- | -- | 0.0435 | 12 | -- | -- | -- | -- |
| 68.56 | 0.386 | 10.3 | -0.611 | -- | 1.9 | -- | -- | -0.269 | -- | 17.9 | 9 | -- | -- |
| 49.27 | 0.327 | 10.2 | -- | 0.781 | 1.21 | -- | -- | -0.113 | 10.5 | 19.7 | 64 | -- | -- |
| 140.53 | 0.554 | 10.2 | -0.227 | -- | -- | -- | -- | 0.0289 | -- | -- | -- | -- | -- |
| 73.72 | 0.402 | 10.2 | -- | 1.04 | -- | -- | -- | 0.0652 | 12 | -- | -- | -- | -- |
| 77.44 | 0.41 | 10.2 | -- | -- | 1.68 | -- | -- | -0.178 | -- | 19.1 | 6 | -- | -- |
| 141.89 | 0.556 | 10.2 | -- | -- | -- | -- | -- | 0.0541 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 41.52 | temperature | 20 | 90 | > th | dose dependent | rect. | 5 | 22 |
| 4 | 41.79 | temperature | 20 | 90 | > th | dose dependent | rect. | 8 | 23 |
| 5 | 41.81 | temperature | 20 | 270 | > th | dose dependent | rect. | 5 | 19 |
| 8 | 42.02 | temperature | 20 | 90 | > th | dose dependent | rect. | 8 | 16 |
| 9 | 42.10 | temperature | 30 | 10 | < th | dose dependent | sin | 18 | NA |
| 32 | 42.69 | temperature | 10 | 10 | > th | dose dependent | sin | 18 | NA |
| 43 | 43.00 | temperature | 20 | 90 | > th | dose dependent | no | NA | NA |
| 56 | 43.16 | temperature | 10 | 30 | > th | dose dependent | no | NA | NA |
| 107 | 43.89 | temperature | 30 | 10 | < th | dose dependent | rect. | 7 | 23 |
| 121 | 44.00 | temperature | 30 | 30 | < th | dose dependent | rect. | 13 | 23 |
| 127 | 44.04 | temperature | 30 | 30 | < th | dose dependent | rect. | 11 | 23 |
| 130 | 44.08 | temperature | 30 | 30 | < th | dose dependent | no | NA | NA |
| 140 | 44.13 | temperature | 30 | 30 | < th | dose dependent | rect. | 15 | 23 |
| 149 | 44.29 | temperature | 30 | 30 | < th | dose dependent | rect. | 23 | 23 |
| 172 | 44.44 | temperature | 30 | 90 | < th | dose dependent | rect. | 9 | 23 |
| 184 | 44.57 | temperature | 30 | 30 | < th | dose dependent | rect. | 21 | 23 |
| 196 | 44.67 | temperature | 30 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 205 | 44.76 | temperature | 30 | 30 | < th | dose dependent | rect. | 17 | 23 |
| 221 | 44.91 | temperature | 30 | 90 | < th | dose dependent | rect. | 1 | 23 |
| 248 | 45.15 | temperature | 20 | 270 | > th | dose dependent | rect. | 16 | 23 |
| 273 | 45.53 | temperature | 20 | 90 | > th | dose dependent | rect. | 19 | 23 |
| 280 | 45.62 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 23 |
| 306 | 45.89 | temperature | 30 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 307 | 45.90 | temperature | 15 | 720 | > th | dose dependent | rect. | 4 | 14 |
| 317 | 46.04 | temperature | 20 | 270 | > th | dose dependent | rect. | 13 | 23 |
| 326 | 46.09 | temperature | 30 | 270 | < th | dose dependent | rect. | 10 | 11 |
| 330 | 46.12 | temperature | 20 | 90 | > th | dose dependent | rect. | 21 | 23 |
| 341 | 46.18 | temperature | 20 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 345 | 46.20 | temperature | 20 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 350 | 46.23 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 356 | 46.28 | temperature | 30 | 720 | < th | dose dependent | sin | 0 | NA |
| 364 | 46.34 | temperature | 15 | 720 | > th | dose dependent | sin | 1 | NA |
| 365 | 46.34 | temperature | 30 | 720 | < th | dose dependent | rect. | 4 | 15 |
| 412 | 46.62 | temperature | 20 | 90 | > th | dose dependent | rect. | 11 | 23 |
| 435 | 46.76 | temperature | 30 | 720 | < th | dose dependent | rect. | 7 | 11 |
| 473 | 46.98 | temperature | 20 | 720 | > th | dose dependent | rect. | 8 | 8 |
| 649 | 47.74 | temperature | 20 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 704 | 47.91 | temperature | 20 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 716 | 47.96 | temperature | 30 | 90 | < th | dose dependent | rect. | 11 | 18 |
| 949 | 48.90 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 1 |