Os01g0140400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Leucine rich repeat, N-terminal domain containing protein.
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Os01g0140400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Leucine rich repeat, N-terminal domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 146.3 | 0.568 | 6.37 | -0.453 | 0.668 | 0.311 | -0.0111 | 4.13 | -0.494 | 3.37 | 11.07 | 1381 | -- | -- |
| 149.5 | 0.569 | 6.45 | -1.39 | 0.631 | 0.526 | 0.136 | -- | -0.572 | 3.58 | 30.89 | 1195 | -- | -- |
| 146.3 | 0.563 | 6.37 | -0.453 | 0.668 | 0.312 | -- | 4.13 | -0.494 | 3.37 | 11.05 | 1381 | -- | -- |
| 149.55 | 0.57 | 6.45 | -1.39 | 0.635 | 0.528 | -- | -- | -0.572 | 3.57 | 30.94 | 1195 | -- | -- |
| 170.06 | 0.607 | 6.38 | -0.514 | -- | 0.54 | -- | 4.17 | -0.523 | -- | 6.6 | 1206 | -- | -- |
| 162.69 | 0.598 | 6.47 | -1.25 | 0.702 | -- | 0.277 | -- | -0.67 | 3.3 | -- | -- | -- | -- |
| 162.93 | 0.598 | 6.47 | -1.25 | 0.703 | -- | -- | -- | -0.671 | 3.32 | -- | -- | -- | -- |
| 171.57 | 0.61 | 6.45 | -1.37 | -- | 0.626 | -- | -- | -0.537 | -- | 31 | 1184 | -- | -- |
| 198.45 | 0.656 | 6.42 | -- | 0.614 | 0.34 | -- | -- | -0.461 | 3.42 | 31.9 | 1160 | -- | -- |
| 190.87 | 0.646 | 6.47 | -1.22 | -- | -- | -- | -- | -0.653 | -- | -- | -- | -- | -- |
| 204.39 | 0.669 | 6.44 | -- | 0.679 | -- | -- | -- | -0.532 | 3.32 | -- | -- | -- | -- |
| 220.33 | 0.691 | 6.42 | -- | -- | 0.445 | -- | -- | -0.426 | -- | 31.7 | 1161 | -- | -- |
| 230.41 | 0.709 | 6.44 | -- | -- | -- | -- | -- | -0.517 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 141.45 | radiation | 30 | 4320 | < th | dose independent | rect. | 24 | 8 |
| 9 | 141.99 | radiation | 30 | 4320 | < th | dose independent | rect. | 6 | 2 |
| 10 | 141.99 | radiation | 30 | 4320 | < th | dose independent | rect. | 17 | 15 |
| 15 | 142.49 | radiation | 30 | 4320 | > th | dose independent | rect. | 16 | 16 |
| 17 | 143.55 | radiation | 30 | 4320 | > th | dose independent | rect. | 7 | 1 |
| 32 | 143.56 | radiation | 20 | 4320 | > th | dose dependent | rect. | 6 | 2 |
| 80 | 145.53 | temperature | 10 | 1440 | > th | dose dependent | rect. | 7 | 16 |
| 90 | 145.59 | temperature | 10 | 1440 | > th | dose dependent | rect. | 4 | 18 |
| 120 | 145.70 | temperature | 10 | 1440 | > th | dose dependent | sin | 20 | NA |
| 122 | 145.70 | temperature | 30 | 720 | < th | dose dependent | rect. | 15 | 12 |
| 133 | 145.72 | temperature | 10 | 1440 | > th | dose dependent | rect. | 14 | 8 |
| 146 | 145.74 | temperature | 30 | 720 | < th | dose dependent | rect. | 16 | 10 |
| 218 | 145.89 | temperature | 10 | 1440 | > th | dose dependent | rect. | 17 | 2 |
| 292 | 146.02 | temperature | 10 | 720 | > th | dose dependent | sin | 14 | NA |
| 394 | 146.19 | wind | 1 | 14400 | > th | dose independent | rect. | 20 | 6 |
| 459 | 146.29 | wind | 1 | 14400 | < th | dose independent | rect. | 20 | 6 |
| 478 | 146.30 | temperature | 10 | 1440 | > th | dose dependent | rect. | 12 | 23 |
| 483 | 146.31 | temperature | 15 | 720 | > th | dose dependent | rect. | 15 | 15 |
| 491 | 146.33 | temperature | 10 | 1440 | > th | dose dependent | no | NA | NA |
| 583 | 146.44 | temperature | 10 | 1440 | > th | dose dependent | rect. | 17 | 23 |
| 598 | 146.47 | temperature | 20 | 1440 | > th | dose dependent | rect. | 6 | 4 |
| 757 | 146.68 | wind | 1 | 14400 | < th | dose independent | rect. | 17 | 9 |
| 775 | 146.70 | wind | 1 | 14400 | > th | dose independent | rect. | 17 | 9 |
| 806 | 146.73 | temperature | 30 | 720 | < th | dose dependent | sin | 15 | NA |
| 820 | 146.75 | temperature | 30 | 720 | < th | dose dependent | rect. | 10 | 18 |