Os01g0139100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description :
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Os01g0139100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description :
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 106.86 | 0.486 | 2.9 | -0.224 | 0.0692 | -0.251 | -0.486 | 0.94 | 0.0485 | 23.2 | 58.94 | 37 | -- | -- |
| 108.33 | 0.488 | 2.9 | -0.228 | 0.0707 | -0.25 | -0.269 | -- | 0.0398 | 23.4 | 57.01 | 28 | -- | -- |
| 107.42 | 0.486 | 2.9 | -0.212 | 0.0906 | -0.27 | -- | 0.744 | 0.0483 | 1.58 | 58.94 | 37 | -- | -- |
| 108.47 | 0.488 | 2.9 | -0.219 | 0.0942 | -0.269 | -- | -- | 0.0412 | 2 | 57.01 | 28 | -- | -- |
| 107.87 | 0.486 | 2.9 | -0.207 | -- | -0.23 | -- | 0.746 | 0.0463 | -- | 58.69 | 37 | -- | -- |
| 110.03 | 0.492 | 2.91 | -0.227 | 0.0212 | -- | -0.347 | -- | 0.0173 | 21.1 | -- | -- | -- | -- |
| 110.4 | 0.492 | 2.91 | -0.216 | 0.0349 | -- | -- | -- | 0.0168 | 0.855 | -- | -- | -- | -- |
| 108.95 | 0.488 | 2.9 | -0.215 | -- | -0.226 | -- | -- | 0.0393 | -- | 57.4 | 27 | -- | -- |
| 109.73 | 0.491 | 2.9 | -- | 0.0895 | -0.266 | -- | -- | 0.0653 | 1.94 | 57.01 | 28 | -- | -- |
| 110.48 | 0.491 | 2.91 | -0.215 | -- | -- | -- | -- | 0.0175 | -- | -- | -- | -- | -- |
| 111.63 | 0.494 | 2.9 | -- | 0.0316 | -- | -- | -- | 0.0409 | 0.551 | -- | -- | -- | -- |
| 110.17 | 0.49 | 2.9 | -- | -- | -0.226 | -- | -- | 0.0631 | -- | 57.4 | 27 | -- | -- |
| 111.69 | 0.493 | 2.9 | -- | -- | -- | -- | -- | 0.0413 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 99.37 | humidity | 60 | 270 | < th | dose independent | rect. | 9 | 1 |
| 30 | 100.54 | humidity | 70 | 270 | < th | dose dependent | rect. | 9 | 1 |
| 31 | 100.61 | humidity | 90 | 270 | > th | dose dependent | rect. | 20 | 1 |
| 45 | 101.26 | wind | 9 | 14400 | > th | dose independent | rect. | 1 | 1 |
| 47 | 101.26 | wind | 9 | 14400 | > th | dose dependent | rect. | 1 | 1 |
| 63 | 101.77 | humidity | 60 | 1440 | > th | dose independent | rect. | 1 | 9 |
| 65 | 101.80 | humidity | 60 | 1440 | > th | dose independent | rect. | 8 | 2 |
| 67 | 101.82 | humidity | 60 | 1440 | > th | dose independent | rect. | 23 | 11 |
| 70 | 101.85 | humidity | 60 | 1440 | > th | dose independent | rect. | 4 | 6 |
| 78 | 101.98 | humidity | 60 | 1440 | > th | dose independent | rect. | 20 | 14 |
| 180 | 102.86 | radiation | 10 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 181 | 102.90 | humidity | 60 | 10 | < th | dose independent | sin | 9 | NA |
| 191 | 103.09 | humidity | 60 | 30 | > th | dose independent | sin | 9 | NA |
| 212 | 103.27 | radiation | 10 | 720 | < th | dose dependent | rect. | 15 | 1 |
| 222 | 103.36 | humidity | 60 | 30 | < th | dose dependent | sin | 9 | NA |
| 239 | 103.41 | temperature | 20 | 30 | > th | dose independent | rect. | 20 | 4 |
| 266 | 103.72 | radiation | 40 | 10 | > th | dose dependent | sin | 11 | NA |
| 289 | 103.83 | wind | 1 | 10 | < th | dose independent | rect. | 6 | 4 |
| 408 | 103.91 | wind | 1 | 10 | < th | dose dependent | rect. | 8 | 2 |
| 424 | 103.92 | humidity | 60 | 10 | < th | dose independent | rect. | 9 | 1 |
| 519 | 103.93 | humidity | 60 | 10 | < th | dose dependent | rect. | 9 | 1 |
| 589 | 103.96 | humidity | 70 | 270 | < th | dose dependent | sin | 8 | NA |
| 591 | 103.97 | wind | 1 | 10 | < th | dose independent | rect. | 9 | 1 |
| 645 | 104.05 | radiation | 40 | 30 | > th | dose dependent | rect. | 9 | 1 |
| 785 | 104.26 | radiation | 10 | 720 | < th | dose independent | rect. | 15 | 1 |
| 807 | 104.33 | radiation | 10 | 720 | < th | dose dependent | rect. | 15 | 8 |
| 819 | 104.39 | humidity | 70 | 270 | > th | dose independent | rect. | 22 | 12 |
| 891 | 104.57 | humidity | 80 | 270 | > th | dose independent | rect. | 19 | 2 |
| 892 | 104.57 | humidity | 60 | 10 | > th | dose independent | rect. | 24 | 13 |
| 980 | 104.69 | radiation | 40 | 10 | > th | dose independent | sin | 11 | NA |