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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0138400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein kinase-like domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.48 (0.0581) R2 : 0.729
β1 : 2.42 (0.218) R2dD : 0.0844 R2D : 0.0976
β2 : 3.74 (0.146) R2dC : 0.395 R2C : 0.381
β3 : 4.07 (0.305) R2dE : 0.147 R2E : 0.132
β4 : 4.82 (0.65) R2dD*C : 0.0329 R2D*C : 0.0282
β5 : 6.75 (0.93) R2dD*E : 0.0425 R2D*E : -0.0321
γ1 : 1.12 (0.121) R2dN8 : 0.0682 R2N8 : 0.00993
σ : 1.07
deviance : 515.56
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_____
C
peak time of C : 16.5
E
wheather : radiation
threshold : 29.99
memory length : 1443
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 15
open length of G : 17.1

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
515.56 1.07 5.48 2.42 3.74 4.07 4.82 6.75 1.12 16.5 29.99 1443 15 17.1
550.09 1.09 5.48 2.97 3.93 3.07 4.51 -- 1.24 16.2 29.37 1464 14.8 17.6
577.27 1.12 5.48 2.46 3.76 4.07 -- 6.77 1.09 16.6 29.99 1443 15 17.2
596.1 1.14 5.5 2.99 3.82 3.24 -- -- 1.23 16.2 28.26 1458 15 17.4
1279.85 1.67 5.5 2.58 -- 4.12 -- 6.98 1.13 -- 30.55 1428 15 17.1
718.11 1.26 5.57 3.31 3.85 -- 5.1 -- 1.09 16.5 -- -- -- --
787.66 1.31 5.55 3.35 3.89 -- -- -- 1.12 16.6 -- -- -- --
1287.37 1.67 5.54 3.25 -- 3.78 -- -- 1.15 -- 30.34 1426 15 17.2
824.51 1.34 5.5 -- 3.85 3.55 -- -- 1.18 16.1 28.25 1458 15 17.1
1593.91 1.87 5.52 3.2 -- -- -- -- 1.02 -- -- -- -- --
1083.12 1.54 5.64 -- 3.83 -- -- -- 0.748 16.6 -- -- -- --
1512.36 1.81 5.57 -- -- 4.09 -- -- 0.789 -- 29.06 1428 15 17.2
1863.73 2.02 5.6 -- -- -- -- -- 0.664 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 518.69 radiation 30 1440 < th dose independent rect. 15 17
2 522.13 radiation 30 1440 < th dose independent rect. 15 5
4 522.32 radiation 30 1440 < th dose independent rect. 15 14
9 522.81 radiation 30 1440 < th dose independent rect. 15 1
10 522.84 radiation 30 1440 < th dose independent rect. 15 12
14 523.45 radiation 30 1440 < th dose independent rect. 15 9
16 523.57 radiation 30 1440 > th dose independent rect. 15 17
19 526.51 radiation 30 1440 > th dose independent rect. 15 1
35 527.99 radiation 20 1440 > th dose dependent rect. 15 17
36 528.46 temperature 30 1440 > th dose dependent rect. 13 1
37 529.26 temperature 25 14400 > th dose dependent rect. 7 1
38 529.76 temperature 25 14400 > th dose dependent rect. 4 5
40 530.01 temperature 25 14400 > th dose dependent rect. 6 3
54 531.28 temperature 25 14400 > th dose independent rect. 20 1
55 531.33 temperature 25 14400 < th dose independent rect. 20 1
56 531.36 temperature 30 14400 > th dose dependent rect. 12 1
62 531.63 temperature 25 14400 > th dose independent rect. 19 4
73 532.45 temperature 30 14400 > th dose dependent rect. 18 20
86 532.84 temperature 30 14400 < th dose independent rect. 18 18
120 532.96 temperature 30 14400 < th dose independent sin 7 NA
124 533.08 temperature 30 14400 < th dose independent rect. 10 1
127 533.11 temperature 30 1440 > th dose independent rect. 11 2
130 533.14 temperature 30 1440 < th dose independent rect. 11 2
131 533.14 temperature 30 14400 > th dose independent rect. 18 18
138 533.38 temperature 30 1440 > th dose independent rect. 16 1
140 533.40 temperature 30 14400 > th dose dependent sin 5 NA
143 533.44 temperature 30 14400 > th dose independent rect. 10 1
144 533.44 temperature 30 14400 < th dose independent rect. 2 10
148 533.49 temperature 30 1440 < th dose independent rect. 16 1
154 533.53 temperature 30 14400 < th dose independent rect. 4 8
158 533.56 temperature 30 14400 < th dose independent rect. 7 5
168 533.62 temperature 30 14400 > th dose independent sin 7 NA
188 533.78 temperature 25 14400 > th dose dependent rect. 18 16
201 533.96 temperature 30 14400 > th dose independent rect. 9 3
205 534.04 radiation 20 1440 > th dose dependent rect. 15 2
312 534.39 temperature 30 14400 > th dose dependent no NA NA
443 534.48 temperature 30 14400 > th dose dependent rect. 12 23
447 534.49 radiation 40 1440 < th dose dependent rect. 15 2
496 534.69 temperature 25 14400 > th dose dependent rect. 18 4
652 535.24 radiation 40 1440 < th dose dependent rect. 15 12
690 535.37 temperature 30 1440 > th dose dependent sin 1 NA
745 535.87 temperature 30 14400 < th dose independent rect. 16 19
845 536.29 humidity 70 1440 > th dose independent rect. 18 20
907 536.49 temperature 30 14400 > th dose independent rect. 15 21
948 536.60 temperature 30 14400 > th dose independent rect. 16 19
954 536.74 temperature 30 1440 > th dose dependent no NA NA