Os01g0138300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein kinase-like domain containing protein.
FiT-DB / Search/ Help/ Sample detail
|
Os01g0138300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Protein kinase-like domain containing protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 192.98 | 0.653 | 6.91 | -1.38 | 1.85 | -1.39 | -0.275 | 0.329 | -0.23 | 4.43 | 57 | 878 | -- | -- |
| 193.07 | 0.647 | 6.91 | -1.39 | 1.87 | -1.37 | -0.237 | -- | -0.226 | 4.43 | 57 | 889 | -- | -- |
| 193.09 | 0.647 | 6.91 | -1.37 | 1.86 | -1.4 | -- | 0.294 | -0.226 | 4.42 | 56.97 | 889 | -- | -- |
| 193.22 | 0.647 | 6.91 | -1.39 | 1.86 | -1.38 | -- | -- | -0.225 | 4.42 | 56.86 | 894 | -- | -- |
| 267.34 | 0.762 | 6.91 | -1.26 | -- | -2.07 | -- | 0.387 | 0.000165 | -- | 68 | 405 | -- | -- |
| 240.34 | 0.727 | 6.86 | -1.61 | 1.88 | -- | -0.306 | -- | -0.0197 | 4.93 | -- | -- | -- | -- |
| 240.57 | 0.726 | 6.86 | -1.61 | 1.88 | -- | -- | -- | -0.0182 | 4.9 | -- | -- | -- | -- |
| 254.18 | 0.743 | 6.86 | -1.38 | -- | -1.83 | -- | -- | 0.114 | -- | 72.99 | 406 | -- | -- |
| 243.34 | 0.727 | 6.9 | -- | 1.92 | -1.46 | -- | -- | -0.179 | 4.29 | 63.06 | 1048 | -- | -- |
| 426.54 | 0.965 | 6.88 | -1.54 | -- | -- | -- | -- | 0.0302 | -- | -- | -- | -- | -- |
| 308.89 | 0.822 | 6.82 | -- | 1.85 | -- | -- | -- | 0.161 | 4.93 | -- | -- | -- | -- |
| 306.77 | 0.816 | 6.82 | -- | -- | -1.88 | -- | -- | 0.265 | -- | 72.92 | 407 | -- | -- |
| 489.17 | 1.03 | 6.84 | -- | -- | -- | -- | -- | 0.201 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 183.73 | humidity | 60 | 720 | > th | dose independent | rect. | 11 | 10 |
| 3 | 183.87 | humidity | 60 | 720 | > th | dose independent | rect. | 9 | 13 |
| 7 | 184.43 | humidity | 60 | 720 | > th | dose independent | rect. | 11 | 19 |
| 13 | 185.77 | humidity | 60 | 720 | > th | dose independent | rect. | 14 | 7 |
| 23 | 186.88 | humidity | 70 | 720 | > th | dose independent | rect. | 16 | 14 |
| 24 | 186.90 | humidity | 60 | 720 | > th | dose independent | sin | 19 | NA |
| 27 | 187.18 | humidity | 60 | 720 | > th | dose independent | rect. | 14 | 17 |
| 28 | 187.19 | humidity | 70 | 720 | > th | dose independent | rect. | 17 | 4 |
| 57 | 188.43 | humidity | 60 | 720 | > th | dose independent | sin | 13 | NA |
| 78 | 190.15 | humidity | 60 | 720 | > th | dose independent | rect. | 5 | 17 |
| 94 | 191.10 | humidity | 70 | 720 | < th | dose dependent | rect. | 15 | 3 |
| 98 | 191.16 | humidity | 70 | 720 | < th | dose dependent | rect. | 15 | 19 |
| 196 | 194.24 | humidity | 70 | 720 | < th | dose dependent | sin | 14 | NA |
| 203 | 194.35 | humidity | 50 | 720 | > th | dose dependent | rect. | 11 | 10 |
| 218 | 194.66 | temperature | 30 | 720 | < th | dose independent | rect. | 15 | 15 |
| 219 | 194.67 | humidity | 50 | 720 | > th | dose dependent | rect. | 9 | 12 |
| 234 | 194.72 | humidity | 60 | 720 | < th | dose independent | rect. | 14 | 20 |
| 247 | 195.05 | humidity | 60 | 720 | < th | dose independent | rect. | 14 | 5 |
| 254 | 195.13 | humidity | 60 | 720 | > th | dose independent | rect. | 16 | 21 |
| 264 | 195.27 | temperature | 30 | 720 | < th | dose independent | rect. | 14 | 7 |
| 273 | 195.40 | humidity | 50 | 720 | > th | dose dependent | rect. | 15 | 6 |
| 347 | 196.34 | humidity | 60 | 720 | < th | dose independent | sin | 15 | NA |
| 351 | 196.45 | temperature | 30 | 720 | < th | dose independent | sin | 14 | NA |
| 395 | 196.84 | temperature | 20 | 30 | > th | dose independent | rect. | 20 | 19 |
| 493 | 198.00 | temperature | 30 | 720 | < th | dose independent | rect. | 11 | 10 |
| 531 | 198.28 | temperature | 30 | 720 | < th | dose independent | rect. | 11 | 19 |
| 547 | 198.55 | humidity | 50 | 720 | > th | dose dependent | sin | 20 | NA |
| 580 | 198.79 | wind | 9 | 14400 | > th | dose dependent | rect. | 18 | 18 |
| 591 | 198.88 | wind | 9 | 14400 | < th | dose independent | rect. | 18 | 18 |
| 653 | 199.16 | humidity | 70 | 720 | < th | dose dependent | rect. | 9 | 10 |
| 654 | 199.17 | humidity | 60 | 720 | < th | dose independent | rect. | 9 | 10 |
| 722 | 199.29 | humidity | 70 | 720 | < th | dose dependent | no | NA | NA |
| 798 | 199.36 | wind | 9 | 14400 | > th | dose independent | rect. | 18 | 18 |
| 850 | 199.49 | humidity | 60 | 720 | < th | dose independent | no | NA | NA |
| 932 | 199.52 | humidity | 60 | 720 | > th | dose independent | no | NA | NA |
| 989 | 199.76 | temperature | 30 | 720 | < th | dose independent | sin | 16 | NA |