Os01g0138100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os01g0138100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 31.99 | 0.266 | 3.14 | -0.518 | 0.0172 | 0.0253 | -0.806 | 1.25 | -0.213 | 22.6 | 19.7 | 1611 | -- | -- |
| 33.98 | 0.274 | 3.11 | -0.316 | 0.0382 | -0.168 | -0.806 | -- | -0.169 | 22.7 | 19.7 | 1611 | -- | -- |
| 33.52 | 0.27 | 3.14 | -0.486 | 0.00602 | -0.016 | -- | 1.11 | -0.212 | 21.6 | 20.2 | 784 | -- | -- |
| 36.6 | 0.284 | 3.11 | -0.283 | 0.0537 | -0.162 | -- | -- | -0.166 | 1.56 | 19.7 | 1611 | -- | -- |
| 33.53 | 0.27 | 3.14 | -0.488 | -- | -0.0177 | -- | 1.11 | -0.212 | -- | 20.2 | 784 | -- | -- |
| 34.98 | 0.277 | 3.1 | -0.27 | 0.0107 | -- | -0.781 | -- | -0.142 | 22.7 | -- | -- | -- | -- |
| 37.51 | 0.287 | 3.1 | -0.239 | 0.0199 | -- | -- | -- | -0.14 | 1.77 | -- | -- | -- | -- |
| 36.43 | 0.281 | 3.11 | -0.325 | -- | -0.305 | -- | -- | -0.169 | -- | 18.6 | 312 | -- | -- |
| 37.36 | 0.285 | 3.09 | -- | 0.0417 | 0.206 | -- | -- | -0.0783 | 0.994 | 26.8 | 2224 | -- | -- |
| 37.53 | 0.286 | 3.1 | -0.238 | -- | -- | -- | -- | -0.14 | -- | -- | -- | -- | -- |
| 39.01 | 0.292 | 3.09 | -- | 0.0156 | -- | -- | -- | -0.114 | 1.33 | -- | -- | -- | -- |
| 37.44 | 0.285 | 3.09 | -- | -- | 0.202 | -- | -- | -0.0777 | -- | 27.1 | 2140 | -- | -- |
| 39.03 | 0.292 | 3.09 | -- | -- | -- | -- | -- | -0.113 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 25.49 | radiation | 1 | 720 | < th | dose dependent | rect. | 13 | 3 |
| 3 | 25.55 | radiation | 1 | 720 | < th | dose independent | rect. | 13 | 2 |
| 29 | 25.97 | radiation | 1 | 1440 | > th | dose independent | rect. | 13 | 1 |
| 38 | 26.12 | radiation | 1 | 1440 | > th | dose independent | rect. | 9 | 5 |
| 43 | 26.19 | radiation | 1 | 1440 | > th | dose independent | rect. | 11 | 3 |
| 96 | 27.24 | humidity | 90 | 720 | > th | dose independent | rect. | 12 | 1 |
| 97 | 27.24 | radiation | 1 | 1440 | > th | dose independent | rect. | 9 | 1 |
| 99 | 27.24 | humidity | 90 | 720 | > th | dose dependent | rect. | 12 | 1 |
| 119 | 28.31 | radiation | 1 | 1440 | > th | dose independent | rect. | 4 | 1 |
| 130 | 28.31 | radiation | 1 | 1440 | > th | dose dependent | rect. | 4 | 1 |
| 153 | 28.89 | wind | 7 | 4320 | > th | dose independent | rect. | 17 | 2 |
| 159 | 28.95 | humidity | 70 | 14400 | < th | dose dependent | rect. | 21 | 1 |
| 168 | 28.97 | wind | 9 | 4320 | > th | dose dependent | rect. | 18 | 1 |
| 171 | 29.01 | wind | 7 | 4320 | < th | dose independent | rect. | 17 | 2 |
| 181 | 29.18 | wind | 5 | 4320 | > th | dose dependent | rect. | 18 | 1 |
| 187 | 29.29 | humidity | 60 | 14400 | < th | dose independent | rect. | 6 | 1 |
| 189 | 29.29 | humidity | 60 | 14400 | < th | dose independent | rect. | 20 | 1 |
| 191 | 29.29 | radiation | 20 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 243 | 29.29 | humidity | 60 | 14400 | < th | dose dependent | rect. | 6 | 1 |
| 247 | 29.29 | radiation | 20 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 299 | 29.30 | wind | 7 | 4320 | > th | dose independent | rect. | 15 | 4 |
| 300 | 29.30 | wind | 7 | 4320 | < th | dose independent | rect. | 15 | 4 |
| 315 | 29.54 | wind | 1 | 270 | < th | dose independent | rect. | 23 | 1 |
| 330 | 29.76 | humidity | 60 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 352 | 30.00 | wind | 5 | 4320 | > th | dose dependent | rect. | 15 | 4 |
| 364 | 30.07 | radiation | 10 | 1440 | < th | dose dependent | rect. | 23 | 6 |
| 389 | 30.16 | radiation | 10 | 1440 | < th | dose dependent | rect. | 19 | 10 |
| 396 | 30.22 | humidity | 70 | 14400 | > th | dose independent | rect. | 21 | 1 |
| 402 | 30.26 | wind | 1 | 270 | < th | dose independent | rect. | 23 | 3 |
| 409 | 30.29 | humidity | 60 | 14400 | > th | dose independent | rect. | 20 | 12 |
| 412 | 30.30 | radiation | 1 | 1440 | < th | dose independent | rect. | 23 | 6 |
| 413 | 30.31 | humidity | 70 | 14400 | > th | dose independent | rect. | 21 | 3 |
| 419 | 30.36 | radiation | 1 | 1440 | < th | dose independent | rect. | 19 | 10 |
| 425 | 30.38 | atmosphere | 1015 | 4320 | > th | dose dependent | rect. | 5 | 2 |
| 430 | 30.39 | humidity | 50 | 14400 | > th | dose dependent | rect. | 3 | 4 |
| 438 | 30.41 | radiation | 10 | 1440 | < th | dose dependent | rect. | 4 | 1 |
| 443 | 30.43 | atmosphere | 1005 | 720 | < th | dose independent | rect. | 16 | 6 |
| 466 | 30.48 | humidity | 50 | 14400 | < th | dose dependent | rect. | 9 | 1 |
| 475 | 30.50 | radiation | 10 | 1440 | < th | dose independent | rect. | 4 | 1 |
| 495 | 30.54 | wind | 1 | 270 | < th | dose dependent | rect. | 23 | 2 |
| 501 | 30.55 | temperature | 20 | 90 | > th | dose independent | rect. | 12 | 17 |
| 518 | 30.57 | humidity | 90 | 14400 | < th | dose dependent | rect. | 23 | 4 |
| 536 | 30.61 | humidity | 90 | 14400 | < th | dose dependent | rect. | 21 | 6 |
| 550 | 30.63 | wind | 9 | 4320 | < th | dose dependent | rect. | 18 | 1 |
| 559 | 30.63 | humidity | 90 | 14400 | < th | dose dependent | rect. | 22 | 9 |
| 562 | 30.64 | wind | 5 | 4320 | > th | dose independent | rect. | 15 | 10 |
| 564 | 30.64 | humidity | 50 | 14400 | > th | dose dependent | rect. | 1 | 7 |
| 570 | 30.65 | humidity | 90 | 14400 | < th | dose dependent | rect. | 24 | 1 |
| 599 | 30.67 | radiation | 30 | 14400 | < th | dose independent | rect. | 17 | 9 |
| 606 | 30.68 | temperature | 15 | 14400 | > th | dose independent | rect. | 9 | 3 |
| 627 | 30.71 | atmosphere | 1005 | 720 | < th | dose independent | rect. | 17 | 2 |
| 653 | 30.74 | radiation | 40 | 14400 | > th | dose independent | rect. | 15 | 1 |
| 695 | 30.77 | temperature | 15 | 14400 | < th | dose independent | rect. | 9 | 3 |
| 702 | 30.78 | humidity | 70 | 14400 | > th | dose independent | rect. | 21 | 5 |
| 709 | 30.78 | radiation | 40 | 14400 | > th | dose dependent | rect. | 15 | 1 |
| 772 | 30.82 | humidity | 50 | 14400 | < th | dose independent | rect. | 9 | 1 |
| 804 | 30.87 | temperature | 15 | 14400 | < th | dose dependent | rect. | 4 | 1 |
| 813 | 30.88 | atmosphere | 1005 | 720 | > th | dose independent | rect. | 16 | 8 |
| 857 | 30.93 | wind | 1 | 270 | < th | dose independent | rect. | 1 | 1 |
| 890 | 30.94 | atmosphere | 1015 | 4320 | > th | dose dependent | rect. | 8 | 1 |
| 940 | 31.00 | wind | 7 | 43200 | > th | dose independent | rect. | 13 | 1 |
| 960 | 31.02 | wind | 7 | 43200 | > th | dose dependent | rect. | 13 | 1 |
| 966 | 31.03 | temperature | 20 | 90 | < th | dose independent | sin | 14 | NA |
| 1000 | 31.06 | temperature | 20 | 90 | < th | dose independent | rect. | 15 | 11 |