Os01g0137400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein kinase domain containing protein.
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Os01g0137400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein kinase domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 110.19 | 0.493 | 3.01 | -1.18 | 0.0745 | 1.22 | -0.479 | -11.1 | 0.0303 | 16.1 | 31.1 | 758 | -- | -- |
| 114.59 | 0.502 | 2.88 | -0.025 | 0.112 | -0.11 | -0.43 | -- | 0.0313 | 16.1 | 29.58 | 372 | -- | -- |
| 110.84 | 0.49 | 3.01 | -1.18 | 0.0745 | 1.21 | -- | -11 | 0.0281 | 16.1 | 31.1 | 758 | -- | -- |
| 115.1 | 0.503 | 2.88 | -0.0274 | 0.115 | -0.124 | -- | -- | 0.0296 | 15.8 | 29.58 | 372 | -- | -- |
| 111.09 | 0.491 | 3.01 | -1.17 | -- | 1.22 | -- | -11.1 | 0.0267 | -- | 31.1 | 751 | -- | -- |
| 115.13 | 0.503 | 2.88 | -0.0436 | 0.0711 | -- | -0.494 | -- | 0.0268 | 16.5 | -- | -- | -- | -- |
| 115.78 | 0.504 | 2.88 | -0.0471 | 0.0681 | -- | -- | -- | 0.0242 | 16.6 | -- | -- | -- | -- |
| 115.71 | 0.503 | 2.88 | -0.0388 | -- | -0.0772 | -- | -- | 0.025 | -- | 29.58 | 372 | -- | -- |
| 115.12 | 0.502 | 2.88 | -- | 0.116 | -0.126 | -- | -- | 0.0327 | 15.8 | 29.58 | 372 | -- | -- |
| 116.03 | 0.503 | 2.88 | -0.0497 | -- | -- | -- | -- | 0.0224 | -- | -- | -- | -- | -- |
| 115.84 | 0.503 | 2.88 | -- | 0.069 | -- | -- | -- | 0.0294 | 16.6 | -- | -- | -- | -- |
| 115.75 | 0.503 | 2.88 | -- | -- | -0.0799 | -- | -- | 0.0293 | -- | 29.58 | 372 | -- | -- |
| 116.1 | 0.503 | 2.88 | -- | -- | -- | -- | -- | 0.0279 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 103.94 | temperature | 25 | 30 | > th | dose dependent | rect. | 23 | 1 |
| 3 | 105.30 | temperature | 25 | 30 | > th | dose independent | rect. | 23 | 1 |
| 5 | 106.00 | humidity | 50 | 720 | < th | dose independent | rect. | 13 | 1 |
| 6 | 107.97 | wind | 1 | 30 | < th | dose dependent | rect. | 2 | 2 |
| 7 | 108.28 | temperature | 30 | 720 | > th | dose independent | rect. | 17 | 1 |
| 23 | 108.73 | temperature | 30 | 1440 | < th | dose independent | rect. | 18 | 8 |
| 42 | 108.95 | temperature | 30 | 1440 | < th | dose independent | rect. | 18 | 3 |
| 44 | 108.99 | atmosphere | 1000 | 90 | < th | dose dependent | rect. | 10 | 1 |
| 53 | 109.18 | wind | 1 | 30 | < th | dose independent | rect. | 2 | 2 |
| 67 | 109.32 | temperature | 30 | 1440 | < th | dose independent | rect. | 17 | 13 |
| 68 | 109.32 | temperature | 30 | 1440 | < th | dose independent | rect. | 17 | 15 |
| 87 | 109.58 | humidity | 50 | 1440 | > th | dose independent | rect. | 14 | 1 |
| 92 | 109.65 | wind | 1 | 30 | < th | dose dependent | rect. | 24 | 4 |
| 107 | 109.68 | atmosphere | 1000 | 30 | < th | dose dependent | rect. | 11 | 12 |
| 112 | 109.71 | atmosphere | 1000 | 30 | < th | dose dependent | rect. | 11 | 9 |
| 114 | 109.72 | atmosphere | 1000 | 30 | < th | dose dependent | rect. | 11 | 6 |
| 205 | 110.35 | radiation | 20 | 30 | > th | dose dependent | rect. | 14 | 3 |
| 231 | 110.38 | radiation | 20 | 10 | > th | dose independent | rect. | 14 | 3 |
| 300 | 110.53 | atmosphere | 1000 | 30 | < th | dose dependent | sin | 23 | NA |
| 307 | 110.54 | atmosphere | 1000 | 30 | < th | dose dependent | rect. | 15 | 22 |
| 316 | 110.56 | wind | 1 | 30 | < th | dose independent | rect. | 24 | 4 |
| 415 | 110.64 | wind | 1 | 30 | < th | dose independent | rect. | 11 | 1 |
| 450 | 110.68 | temperature | 30 | 720 | < th | dose independent | sin | 11 | NA |
| 460 | 110.70 | atmosphere | 1000 | 270 | < th | dose independent | rect. | 7 | 9 |
| 472 | 110.72 | temperature | 30 | 720 | > th | dose independent | rect. | 12 | 1 |
| 490 | 110.75 | wind | 9 | 90 | > th | dose dependent | sin | 15 | NA |
| 502 | 110.78 | atmosphere | 1000 | 720 | < th | dose independent | rect. | 4 | 1 |
| 530 | 110.81 | atmosphere | 1000 | 720 | < th | dose dependent | rect. | 4 | 1 |
| 543 | 110.85 | temperature | 30 | 720 | > th | dose independent | sin | 11 | NA |
| 551 | 110.86 | atmosphere | 1000 | 90 | < th | dose independent | rect. | 10 | 6 |
| 586 | 110.92 | wind | 9 | 90 | > th | dose independent | sin | 15 | NA |
| 632 | 110.98 | atmosphere | 1000 | 270 | < th | dose independent | rect. | 8 | 5 |
| 641 | 111.00 | wind | 1 | 30 | < th | dose dependent | rect. | 11 | 17 |
| 662 | 111.04 | atmosphere | 1000 | 90 | < th | dose independent | rect. | 10 | 9 |
| 699 | 111.08 | wind | 9 | 90 | > th | dose dependent | sin | 12 | NA |
| 718 | 111.11 | temperature | 30 | 720 | > th | dose dependent | rect. | 17 | 1 |
| 844 | 111.24 | wind | 9 | 90 | < th | dose independent | sin | 15 | NA |
| 861 | 111.27 | humidity | 50 | 720 | < th | dose independent | rect. | 10 | 5 |
| 905 | 111.30 | wind | 1 | 270 | < th | dose independent | rect. | 11 | 1 |
| 906 | 111.30 | atmosphere | 1000 | 270 | < th | dose independent | rect. | 2 | 14 |
| 956 | 111.34 | atmosphere | 1000 | 720 | < th | dose independent | rect. | 24 | 11 |
| 999 | 111.36 | atmosphere | 1000 | 720 | < th | dose dependent | rect. | 24 | 12 |