Os01g0137300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os01g0137300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 81.97 | 0.425 | 7.19 | -1.19 | 0.395 | -0.696 | 0.0806 | -0.5 | -0.241 | 3.01 | 49.98 | 4368 | -- | -- |
| 82.2 | 0.422 | 7.18 | -1.16 | 0.413 | -0.843 | 0.0884 | -- | -0.258 | 2.76 | 49.03 | 4376 | -- | -- |
| 81.98 | 0.422 | 7.19 | -1.2 | 0.395 | -0.695 | -- | -0.492 | -0.241 | 3.06 | 50 | 4376 | -- | -- |
| 82.15 | 0.422 | 7.18 | -1.16 | 0.403 | -0.849 | -- | -- | -0.248 | 2.97 | 49.36 | 4376 | -- | -- |
| 90.06 | 0.442 | 7.19 | -1.25 | -- | -0.743 | -- | -1.63 | -0.214 | -- | 49.34 | 4618 | -- | -- |
| 96.75 | 0.461 | 7.15 | -1.52 | 0.363 | -- | -0.0601 | -- | -0.162 | 3.32 | -- | -- | -- | -- |
| 96.76 | 0.461 | 7.15 | -1.51 | 0.363 | -- | -- | -- | -0.162 | 3.28 | -- | -- | -- | -- |
| 91.22 | 0.445 | 7.17 | -1.16 | -- | -0.834 | -- | -- | -0.238 | -- | 49 | 4409 | -- | -- |
| 110.56 | 0.49 | 7.16 | -- | 0.404 | -1.38 | -- | -- | -0.198 | 2.85 | 49.43 | 4376 | -- | -- |
| 104.21 | 0.477 | 7.15 | -1.5 | -- | -- | -- | -- | -0.152 | -- | -- | -- | -- | -- |
| 157.25 | 0.587 | 7.12 | -- | 0.333 | -- | -- | -- | 0.00704 | 3.29 | -- | -- | -- | -- |
| 120.03 | 0.51 | 7.15 | -- | -- | -1.36 | -- | -- | -0.144 | -- | 49 | 4377 | -- | -- |
| 163.52 | 0.597 | 7.12 | -- | -- | -- | -- | -- | 0.0142 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 73.09 | wind | 9.0 | 14400 | < th | dose independent | rect. | 3 | 10 |
| 7 | 74.43 | wind | 3.0 | 14400 | > th | dose independent | rect. | 2 | 4 |
| 8 | 74.46 | wind | 3.0 | 14400 | > th | dose independent | rect. | 2 | 2 |
| 9 | 74.51 | wind | 9.0 | 14400 | > th | dose independent | rect. | 4 | 9 |
| 14 | 74.63 | wind | 3.0 | 14400 | < th | dose independent | rect. | 2 | 4 |
| 18 | 74.77 | wind | 3.0 | 14400 | < th | dose independent | rect. | 2 | 2 |
| 22 | 74.94 | wind | 9.0 | 14400 | > th | dose dependent | rect. | 4 | 9 |
| 24 | 75.05 | wind | 9.0 | 14400 | > th | dose dependent | rect. | 12 | 1 |
| 28 | 75.22 | wind | 9.0 | 14400 | < th | dose independent | sin | 6 | NA |
| 40 | 75.38 | wind | 9.0 | 14400 | > th | dose independent | rect. | 5 | 7 |
| 98 | 76.88 | wind | 9.0 | 14400 | > th | dose independent | sin | 6 | NA |
| 112 | 77.09 | wind | 9.0 | 14400 | < th | dose independent | rect. | 10 | 3 |
| 129 | 77.50 | humidity | 80.0 | 14400 | < th | dose dependent | rect. | 5 | 2 |
| 142 | 77.76 | wind | 9.0 | 14400 | > th | dose independent | rect. | 10 | 3 |
| 145 | 77.79 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 5 | 2 |
| 151 | 77.84 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 3 | 4 |
| 167 | 78.00 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 3 | 1 |
| 185 | 78.18 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 3 | 3 |
| 215 | 78.46 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 3 | 1 |
| 226 | 78.53 | wind | 9.0 | 14400 | > th | dose dependent | sin | 6 | NA |
| 245 | 78.72 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 8 | 4 |
| 248 | 78.76 | wind | 9.0 | 14400 | < th | dose independent | rect. | 12 | 1 |
| 258 | 78.86 | wind | 9.0 | 14400 | < th | dose dependent | rect. | 3 | 4 |
| 309 | 79.27 | wind | 9.0 | 14400 | < th | dose dependent | rect. | 3 | 1 |
| 368 | 79.62 | wind | 9.0 | 14400 | > th | dose independent | rect. | 19 | 19 |
| 371 | 79.63 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 7 | 6 |
| 381 | 79.67 | humidity | 90.0 | 14400 | < th | dose dependent | rect. | 3 | 1 |
| 388 | 79.73 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 7 | 5 |
| 420 | 79.87 | wind | 5.0 | 43200 | < th | dose dependent | rect. | 1 | 1 |
| 431 | 79.92 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 9 | 1 |
| 588 | 80.54 | wind | 3.0 | 14400 | < th | dose independent | sin | 8 | NA |
| 593 | 80.56 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 4 | 3 |
| 595 | 80.56 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 4 | 3 |
| 610 | 80.62 | humidity | 50.0 | 4320 | < th | dose independent | sin | 14 | NA |
| 614 | 80.62 | humidity | 50.0 | 4320 | < th | dose independent | rect. | 14 | 21 |
| 621 | 80.65 | wind | 3.0 | 14400 | > th | dose independent | sin | 8 | NA |
| 643 | 80.73 | humidity | 50.0 | 4320 | < th | dose independent | rect. | 14 | 3 |
| 645 | 80.73 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 7 | 5 |
| 650 | 80.74 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 5 | 3 |
| 678 | 80.77 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 7 | 10 |
| 679 | 80.78 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 5 | 3 |
| 711 | 80.90 | humidity | 50.0 | 4320 | < th | dose dependent | sin | 11 | NA |
| 768 | 81.06 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 5 | 5 |
| 771 | 81.06 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 5 | 5 |
| 818 | 81.19 | precipitation | 0.1 | 1440 | > th | dose dependent | rect. | 5 | 8 |
| 819 | 81.20 | precipitation | 0.1 | 1440 | < th | dose independent | rect. | 5 | 7 |
| 821 | 81.20 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 9 | 5 |
| 822 | 81.20 | precipitation | 0.1 | 1440 | < th | dose dependent | rect. | 5 | 7 |
| 841 | 81.26 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 7 | 3 |
| 867 | 81.32 | precipitation | 0.1 | 1440 | > th | dose independent | rect. | 5 | 8 |
| 902 | 81.38 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 4 | 9 |
| 905 | 81.38 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 4 | 9 |
| 906 | 81.39 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 9 | 1 |
| 910 | 81.39 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 5 | 5 |
| 920 | 81.40 | wind | 9.0 | 14400 | < th | dose dependent | rect. | 1 | 10 |
| 922 | 81.41 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 5 | 5 |
| 930 | 81.42 | precipitation | 0.1 | 1440 | > th | dose dependent | rect. | 5 | 6 |
| 935 | 81.44 | humidity | 50.0 | 4320 | > th | dose independent | sin | 14 | NA |
| 969 | 81.53 | wind | 9.0 | 14400 | < th | dose dependent | rect. | 1 | 12 |
| 989 | 81.56 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 7 | 7 |