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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0137200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Receptor serine/threonine kinase.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.77 (0.0461) R2 : 0.714
β1 : 4.55 (0.229) R2dD : 0.525 R2D : -0.426
β2 : 1.52 (0.104) R2dC : 0.134 R2C : 0.168
β3 : -4.2 (0.198) R2dE : 0.354 R2E : 0.0316
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -16.7 (0.91) R2dD*E : 0.427 R2D*E : -0.181
γ1 : 1.66 (0.0938) R2dN8 : 0.263 R2N8 : 0.121
σ : 0.818
deviance : 308.39
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_____
C
peak time of C : 0.825
E
wheather : radiation
threshold : 0.9167
memory length : 4319
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 18
open length of G : 11

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
308.32 0.825 5.77 4.55 1.55 -4.21 0.247 -16.7 1.65 0.814 0.9126 4320 18 11
524.61 1.07 5.75 3.71 2.02 -4.29 0.612 -- 1.94 0.679 4.135 4326 18 11.8
308.39 0.818 5.77 4.55 1.52 -4.2 -- -16.7 1.66 0.825 0.9167 4319 18 11
522.62 1.06 5.75 3.72 2.03 -4.28 -- -- 1.95 0.471 4.373 4323 18 11.8
395.1 0.926 5.74 4.68 -- -4.31 -- -16.7 1.65 -- 1.064 4295 17.9 11.2
701.12 1.24 5.54 0.908 1.72 -- 0.517 -- 1.53 1.11 -- -- -- --
702.23 1.24 5.54 0.89 1.72 -- -- -- 1.53 1.1 -- -- -- --
551.39 1.09 5.75 3.61 -- -4.35 -- -- 2.06 -- 4.492 4293 17.9 11.8
300.54 0.807 5.87 -- 1.55 -3.67 -- -- 0.229 0.829 1.217 47520 18.2 11.3
884.96 1.39 5.51 0.955 -- -- -- -- 1.56 -- -- -- -- --
723.1 1.26 5.56 -- 1.73 -- -- -- 1.43 1.12 -- -- -- --
456.07 0.995 5.8 -- -- -3.76 -- -- 0.292 -- 1.308 47520 18.2 11.3
909.02 1.41 5.54 -- -- -- -- -- 1.46 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 284.03 radiation 1 43200 > th dose independent rect. 18 11
2 284.30 radiation 1 43200 > th dose independent rect. 18 1
12 289.07 radiation 1 43200 < th dose independent rect. 18 9
14 289.10 radiation 1 43200 < th dose independent rect. 18 7
16 289.18 radiation 1 43200 < th dose independent rect. 18 1
18 289.21 radiation 1 43200 < th dose independent rect. 18 5
23 293.82 radiation 1 43200 < th dose dependent rect. 18 11
24 294.30 radiation 1 43200 < th dose dependent rect. 18 1
26 294.34 radiation 1 43200 < th dose dependent rect. 18 5
31 294.80 radiation 1 43200 < th dose dependent rect. 18 9
34 297.54 radiation 1 14400 > th dose independent rect. 18 23
35 297.62 radiation 1 14400 > th dose independent rect. 18 13
38 301.19 radiation 1 14400 > th dose independent rect. 9 22
41 302.01 radiation 1 14400 < th dose independent rect. 18 23
46 302.52 humidity 80 43200 > th dose dependent rect. 17 2
48 302.73 radiation 1 14400 > th dose independent rect. 11 23
49 302.77 radiation 1 14400 > th dose independent sin 1 NA
60 302.79 radiation 1 14400 > th dose independent no NA NA
61 302.79 radiation 1 14400 > th dose independent rect. 4 15
107 302.82 radiation 1 14400 > th dose independent rect. 14 23
153 303.74 radiation 1 14400 > th dose independent rect. 18 16
170 304.03 radiation 1 14400 < th dose independent rect. 22 19
173 304.09 radiation 1 14400 < th dose independent sin 2 NA
174 304.09 radiation 1 14400 < th dose independent rect. 24 17
181 304.13 radiation 1 14400 < th dose independent rect. 2 15
186 304.16 radiation 1 14400 < th dose independent rect. 4 13
214 304.38 radiation 1 14400 < th dose independent rect. 9 22
216 304.40 radiation 1 14400 > th dose independent sin 12 NA
236 304.68 radiation 1 14400 < th dose independent rect. 18 13
243 305.01 radiation 1 14400 > th dose independent rect. 9 10
279 305.42 humidity 90 43200 < th dose independent rect. 17 2
311 305.89 radiation 1 14400 < th dose independent rect. 4 23
312 305.89 radiation 1 14400 < th dose independent rect. 11 23
315 305.89 radiation 1 14400 < th dose independent rect. 24 23
316 305.90 radiation 1 14400 < th dose independent no NA NA
318 305.90 radiation 1 14400 < th dose independent rect. 2 23
321 305.91 radiation 1 14400 < th dose independent rect. 4 21
330 305.92 radiation 1 14400 < th dose independent rect. 14 23
341 305.94 radiation 1 14400 < th dose independent rect. 4 19
345 305.95 humidity 90 43200 > th dose independent rect. 22 1
473 307.20 radiation 1 14400 > th dose independent rect. 14 5
511 307.56 radiation 1 14400 < th dose dependent rect. 14 17
528 307.70 radiation 1 14400 > th dose independent rect. 5 2
531 307.78 radiation 1 14400 < th dose independent rect. 5 2
560 308.09 radiation 1 14400 < th dose dependent rect. 11 20
583 308.13 radiation 1 14400 < th dose independent rect. 22 9
584 308.17 radiation 1 14400 < th dose independent sin 11 NA
587 308.20 radiation 1 14400 < th dose independent rect. 24 7
595 308.27 radiation 1 14400 < th dose independent rect. 2 5
603 308.34 radiation 1 14400 < th dose dependent rect. 5 2
651 309.05 humidity 90 43200 < th dose independent rect. 16 7
655 309.11 temperature 25 43200 < th dose dependent rect. 17 2
677 309.31 radiation 1 14400 < th dose independent rect. 18 16
678 309.33 radiation 1 43200 < th dose dependent sin 15 NA
679 309.34 radiation 1 4320 < th dose dependent rect. 18 11
684 309.43 radiation 1 14400 < th dose dependent rect. 5 14
685 309.43 radiation 1 14400 < th dose dependent rect. 5 18
697 309.55 radiation 1 14400 < th dose dependent rect. 5 22
713 309.85 humidity 90 43200 > th dose independent rect. 16 7
718 309.88 radiation 1 14400 < th dose dependent rect. 14 22
756 310.50 radiation 1 14400 < th dose dependent rect. 2 21
757 310.51 temperature 20 43200 < th dose dependent rect. 5 1
759 310.51 radiation 1 14400 < th dose dependent rect. 2 17
784 310.58 radiation 1 14400 < th dose dependent rect. 22 21
812 310.63 radiation 1 14400 < th dose dependent no NA NA
852 310.78 radiation 1 14400 < th dose dependent rect. 2 5
860 310.91 radiation 1 14400 < th dose dependent rect. 18 23
868 310.97 radiation 1 14400 < th dose dependent rect. 21 10
873 311.01 humidity 90 43200 > th dose independent rect. 11 13
895 311.20 humidity 90 43200 > th dose independent rect. 9 15
906 311.27 humidity 90 43200 > th dose dependent rect. 5 3
922 311.57 humidity 90 43200 > th dose dependent rect. 5 20
923 311.58 humidity 90 43200 > th dose independent rect. 6 18
931 311.62 radiation 1 14400 < th dose independent rect. 9 18
934 311.64 radiation 1 14400 < th dose independent rect. 9 16
941 311.69 radiation 1 14400 < th dose independent rect. 9 10
946 311.71 radiation 1 14400 < th dose independent rect. 9 14
977 311.81 radiation 1 4320 < th dose dependent rect. 18 1