Os01g0136800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein kinase-like domain containing protein.
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Os01g0136800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein kinase-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 58.19 | 0.358 | 11.8 | -0.594 | 0.824 | -2.31 | -0.0143 | 12 | 0.892 | 22.7 | 29.7 | 4077 | -- | -- |
| 61.81 | 0.366 | 11.7 | 0.498 | 0.901 | -1.49 | -0.131 | -- | 0.444 | 22.9 | 21 | 14926 | -- | -- |
| 58.19 | 0.355 | 11.8 | -0.595 | 0.824 | -2.31 | -- | 12 | 0.892 | 22.7 | 29.7 | 4076 | -- | -- |
| 61.74 | 0.366 | 11.7 | 0.527 | 0.887 | -1.46 | -- | -- | 0.459 | 22.8 | 21.04 | 14989 | -- | -- |
| 96.39 | 0.457 | 11.8 | -0.751 | -- | -2.52 | -- | 12.5 | 0.771 | -- | 29.7 | 3772 | -- | -- |
| 95.89 | 0.459 | 11.6 | 1.83 | 0.92 | -- | 0.00565 | -- | 1.03 | 22.8 | -- | -- | -- | -- |
| 95.89 | 0.459 | 11.6 | 1.83 | 0.92 | -- | -- | -- | 1.03 | 22.8 | -- | -- | -- | -- |
| 102.95 | 0.473 | 11.6 | 1.35 | -- | -1.23 | -- | -- | 0.686 | -- | 24.1 | 3755 | -- | -- |
| 62.51 | 0.368 | 11.7 | -- | 0.931 | -1.57 | -- | -- | 0.389 | 22.8 | 21.1 | 26347 | -- | -- |
| 148.29 | 0.569 | 11.5 | 1.85 | -- | -- | -- | -- | 1.03 | -- | -- | -- | -- | -- |
| 184.55 | 0.635 | 11.6 | -- | 0.935 | -- | -- | -- | 0.822 | 22.9 | -- | -- | -- | -- |
| 110.44 | 0.489 | 11.7 | -- | -- | -1.59 | -- | -- | 0.35 | -- | 20.9 | 26794 | -- | -- |
| 238.86 | 0.721 | 11.6 | -- | -- | -- | -- | -- | 0.827 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 55.23 | radiation | 1 | 14400 | < th | dose dependent | rect. | 4 | 1 |
| 2 | 55.25 | radiation | 1 | 14400 | < th | dose dependent | rect. | 2 | 3 |
| 5 | 58.28 | wind | 1 | 43200 | < th | dose dependent | rect. | 24 | 4 |
| 7 | 58.74 | temperature | 25 | 4320 | < th | dose independent | rect. | 6 | 3 |
| 8 | 58.93 | wind | 7 | 43200 | > th | dose dependent | rect. | 10 | 5 |
| 9 | 59.03 | temperature | 25 | 4320 | > th | dose independent | rect. | 6 | 3 |
| 10 | 59.07 | temperature | 25 | 4320 | < th | dose independent | rect. | 7 | 1 |
| 12 | 59.10 | temperature | 25 | 14400 | > th | dose independent | rect. | 11 | 1 |
| 15 | 59.43 | temperature | 25 | 4320 | > th | dose dependent | rect. | 18 | 1 |
| 24 | 59.81 | wind | 9 | 43200 | < th | dose independent | rect. | 9 | 7 |
| 25 | 59.82 | temperature | 25 | 4320 | > th | dose dependent | rect. | 17 | 18 |
| 26 | 59.85 | temperature | 25 | 14400 | < th | dose independent | rect. | 11 | 1 |
| 28 | 59.86 | wind | 9 | 43200 | > th | dose independent | rect. | 9 | 7 |
| 29 | 59.87 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 11 |
| 41 | 60.02 | temperature | 20 | 14400 | < th | dose dependent | rect. | 21 | 3 |
| 43 | 60.03 | temperature | 30 | 4320 | < th | dose independent | rect. | 18 | 22 |
| 60 | 60.40 | temperature | 25 | 4320 | > th | dose dependent | rect. | 5 | 6 |
| 70 | 60.45 | wind | 7 | 43200 | > th | dose independent | rect. | 5 | 10 |
| 77 | 60.51 | wind | 7 | 43200 | < th | dose independent | rect. | 5 | 10 |
| 78 | 60.51 | temperature | 20 | 14400 | < th | dose dependent | rect. | 22 | 1 |
| 83 | 60.53 | temperature | 25 | 4320 | > th | dose dependent | rect. | 16 | 7 |
| 84 | 60.54 | temperature | 30 | 4320 | > th | dose independent | rect. | 18 | 22 |
| 88 | 60.56 | temperature | 30 | 4320 | < th | dose independent | rect. | 9 | 7 |
| 89 | 60.57 | temperature | 30 | 4320 | < th | dose independent | rect. | 1 | 15 |
| 90 | 60.57 | temperature | 30 | 4320 | < th | dose independent | rect. | 22 | 18 |
| 102 | 60.59 | temperature | 30 | 4320 | < th | dose independent | rect. | 4 | 12 |
| 136 | 60.73 | temperature | 30 | 4320 | < th | dose independent | rect. | 14 | 22 |
| 145 | 60.78 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 9 |
| 149 | 60.80 | temperature | 25 | 4320 | > th | dose dependent | rect. | 8 | 1 |
| 156 | 60.83 | temperature | 20 | 14400 | > th | dose independent | rect. | 19 | 10 |
| 157 | 60.83 | temperature | 25 | 4320 | > th | dose dependent | rect. | 10 | 1 |
| 163 | 60.85 | wind | 1 | 43200 | < th | dose dependent | rect. | 21 | 8 |
| 169 | 60.88 | temperature | 20 | 14400 | > th | dose independent | rect. | 21 | 6 |
| 173 | 60.89 | temperature | 25 | 4320 | > th | dose dependent | sin | 8 | NA |
| 202 | 60.98 | temperature | 20 | 14400 | < th | dose independent | rect. | 21 | 6 |
| 212 | 61.02 | temperature | 20 | 14400 | < th | dose independent | rect. | 21 | 4 |
| 222 | 61.05 | temperature | 20 | 14400 | > th | dose independent | sin | 13 | NA |
| 223 | 61.05 | temperature | 30 | 4320 | > th | dose independent | rect. | 9 | 7 |
| 228 | 61.06 | radiation | 1 | 43200 | < th | dose dependent | rect. | 21 | 8 |
| 277 | 61.14 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 1 |
| 340 | 61.25 | temperature | 20 | 14400 | < th | dose independent | rect. | 22 | 1 |
| 341 | 61.25 | radiation | 10 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 353 | 61.26 | temperature | 25 | 4320 | > th | dose dependent | rect. | 4 | 19 |
| 360 | 61.27 | temperature | 25 | 4320 | > th | dose dependent | rect. | 6 | 17 |
| 378 | 61.31 | temperature | 20 | 14400 | < th | dose independent | sin | 13 | NA |
| 379 | 61.31 | temperature | 20 | 14400 | > th | dose independent | rect. | 22 | 1 |
| 382 | 61.31 | temperature | 30 | 4320 | > th | dose independent | rect. | 14 | 22 |
| 384 | 61.31 | temperature | 20 | 4320 | > th | dose dependent | rect. | 5 | 2 |
| 441 | 61.38 | temperature | 20 | 14400 | > th | dose independent | rect. | 24 | 1 |
| 460 | 61.39 | temperature | 30 | 4320 | < th | dose independent | rect. | 13 | 3 |
| 528 | 61.45 | temperature | 30 | 4320 | < th | dose independent | sin | 0 | NA |
| 561 | 61.48 | temperature | 20 | 14400 | < th | dose independent | rect. | 24 | 3 |
| 568 | 61.48 | temperature | 30 | 4320 | < th | dose independent | rect. | 9 | 18 |
| 587 | 61.49 | temperature | 30 | 4320 | < th | dose independent | rect. | 9 | 15 |
| 604 | 61.50 | temperature | 30 | 4320 | < th | dose independent | no | NA | NA |
| 634 | 61.50 | temperature | 30 | 4320 | < th | dose independent | rect. | 4 | 23 |
| 699 | 61.52 | temperature | 20 | 14400 | < th | dose independent | rect. | 24 | 1 |
| 772 | 61.55 | temperature | 25 | 14400 | > th | dose independent | rect. | 10 | 10 |
| 787 | 61.56 | temperature | 25 | 4320 | > th | dose dependent | no | NA | NA |
| 875 | 61.63 | temperature | 25 | 4320 | > th | dose dependent | rect. | 21 | 23 |
| 880 | 61.65 | temperature | 20 | 14400 | > th | dose independent | rect. | 4 | 1 |
| 904 | 61.67 | temperature | 30 | 4320 | < th | dose independent | rect. | 13 | 16 |
| 917 | 61.68 | temperature | 20 | 14400 | < th | dose independent | rect. | 4 | 1 |
| 920 | 61.68 | temperature | 30 | 4320 | < th | dose independent | rect. | 13 | 6 |
| 922 | 61.68 | temperature | 30 | 4320 | < th | dose independent | rect. | 13 | 14 |
| 943 | 61.69 | temperature | 30 | 4320 | < th | dose independent | rect. | 13 | 11 |
| 960 | 61.70 | temperature | 30 | 4320 | < th | dose independent | rect. | 13 | 9 |
| 998 | 61.72 | temperature | 25 | 4320 | > th | dose dependent | rect. | 10 | 23 |